Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_H12
(902 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z71267-1|CAA95851.2| 172|Caenorhabditis elegans Hypothetical pr... 42 8e-04
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 32 0.65
Z74044-1|CAA98550.1| 548|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z74039-11|CAA98508.1| 548|Caenorhabditis elegans Hypothetical p... 31 1.1
AF077307-1|AAC98095.1| 548|Caenorhabditis elegans acetyl cholin... 31 1.1
AC084159-14|AAK39369.2| 480|Caenorhabditis elegans Hypothetical... 29 3.4
Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 4.5
U41034-2|AAA82379.1| 915|Caenorhabditis elegans Hypothetical pr... 29 4.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 4.5
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 6.0
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 29 6.0
U53338-1|AAA96189.2| 152|Caenorhabditis elegans Hypothetical pr... 28 7.9
>Z71267-1|CAA95851.2| 172|Caenorhabditis elegans Hypothetical
protein W01A8.4 protein.
Length = 172
Score = 41.5 bits (93), Expect = 8e-04
Identities = 24/109 (22%), Positives = 49/109 (44%)
Frame = +2
Query: 119 NNYGLSDAELNLIKTQASRRAEMRREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQF 298
+ Y LSD E + + + +++E+L++ +P + G D A+ R+ S +TQ
Sbjct: 42 HEYNLSDEEKKAVLWRYRVKEILKKEYLRREYDPHSFKYKEGVTMDPAMFRWYSADMTQA 101
Query: 299 EYFTVNKRTSLFGFFVIVVPMFTFGTLIWNERTQREQKIRSGELRYKDR 445
E+F RT + + + L++ + + G+L + DR
Sbjct: 102 EFFRFTPRTVFLYVGTVFALFYIYTRLMFVPMDKSNEACLDGKLLWWDR 150
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 31.9 bits (69), Expect = 0.65
Identities = 27/94 (28%), Positives = 29/94 (30%)
Frame = -1
Query: 800 GGVLXVGWGXGXXGFPKGAGXXPXFAQRXXGXLXGXVXXXXXXXXXXGLWXGXGGXGXPP 621
GG GWG G G+ +G G R G G G G GG G
Sbjct: 41 GGWGRPGWGGGGPGWGRGGGGSGWGGGRGGG--WGNNGGGGNWGGNGGGGNGGGGRGGGG 98
Query: 620 XGGXXXXXGXXXXXXXXXGGXXXXGXXXGXGXGG 519
GG G GG G G G GG
Sbjct: 99 GGGGGRGGGGGGRGGGGGGGGGRGGGGGGRGGGG 132
>Z74044-1|CAA98550.1| 548|Caenorhabditis elegans Hypothetical
protein T26H10.1 protein.
Length = 548
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/65 (23%), Positives = 28/65 (43%)
Frame = +2
Query: 179 AEMRREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQFEYFTVNKRTSLFGFFVIVVP 358
+E+ +FL R P ++++ + V +FE+F + F FV+
Sbjct: 466 SELSSKFLTSRMRPKSQKDNTFAAMQSSIKANRQLAVAEFEWFATVVERTCFVIFVVAFL 525
Query: 359 MFTFG 373
+ TFG
Sbjct: 526 IITFG 530
>Z74039-11|CAA98508.1| 548|Caenorhabditis elegans Hypothetical
protein T26H10.1 protein.
Length = 548
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/65 (23%), Positives = 28/65 (43%)
Frame = +2
Query: 179 AEMRREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQFEYFTVNKRTSLFGFFVIVVP 358
+E+ +FL R P ++++ + V +FE+F + F FV+
Sbjct: 466 SELSSKFLTSRMRPKSQKDNTFAAMQSSIKANRQLAVAEFEWFATVVERTCFVIFVVAFL 525
Query: 359 MFTFG 373
+ TFG
Sbjct: 526 IITFG 530
>AF077307-1|AAC98095.1| 548|Caenorhabditis elegans acetyl choline
receptor alpha subunitDES-2 protein.
Length = 548
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/65 (23%), Positives = 28/65 (43%)
Frame = +2
Query: 179 AEMRREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQFEYFTVNKRTSLFGFFVIVVP 358
+E+ +FL R P ++++ + V +FE+F + F FV+
Sbjct: 466 SELSSKFLTSRMRPKSQKDNTFAAMQSSIKANRQLAVAEFEWFATVVERTCFVIFVVAFL 525
Query: 359 MFTFG 373
+ TFG
Sbjct: 526 IITFG 530
>AC084159-14|AAK39369.2| 480|Caenorhabditis elegans Hypothetical
protein Y73B3A.6 protein.
Length = 480
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 286 FHGQKPLQCCVENITSL--RSVFPGVCSLFQELPSHFSTP 173
F +Q C++N L R++ PG SL Q L HF+ P
Sbjct: 326 FKDHATIQSCMQNGVDLTIRNIPPGTTSLIQPLDVHFNGP 365
>Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical
protein R102.6 protein.
Length = 324
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/36 (33%), Positives = 12/36 (33%)
Frame = +2
Query: 509 CXXXPPPPXPXXXPXXXPPXPXXXXXXXXPXXXXSP 616
C PPPP P P PP P P P
Sbjct: 239 CSCLPPPPSPVCMPPPPPPCPMPIPCPPPPPACSCP 274
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Frame = +1
Query: 508 MXXXPPXPXPXXXPXXXXPPXXXXXXXXXPXXXXXPPX-GGXPXPPXP 648
M PP P P P PP P PP GG P PP P
Sbjct: 295 MWPPPPPPPPGRTPG---PPGMPGMPPPPPPSRFGPPGMGGMPPPPPP 339
>U41034-2|AAA82379.1| 915|Caenorhabditis elegans Hypothetical
protein M02D8.3 protein.
Length = 915
Score = 29.1 bits (62), Expect = 4.5
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Frame = -2
Query: 424 STANLLFTLRSLVPYQGTKC---KHGYNNNKKSKQTSSLVYGKIFKLCYFHGQKPLQCCV 254
++A F RS P + C H NN++S ++ Y K + KP+ V
Sbjct: 221 TSATTGFRRRSESPIEFLGCILRNHPVLNNQRSCANAAARYNKNVPSLPLNTPKPITPVV 280
Query: 253 ENITSLRSVFPGVCSLFQELPSHFSTP 173
IT S G CSL +++PS P
Sbjct: 281 --ITECASNTNGSCSLAEDMPSALPVP 305
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Frame = +1
Query: 508 MXXXPPXPXPXXXPXXXXPPXXXXXXXXXPXXXXXPPX-GGXPXPPXP 648
M PP P P P PP P PP GG P PP P
Sbjct: 305 MWPPPPPPPPGRTPG---PPGMPGMPPPPPPSRFGPPGMGGMPPPPPP 349
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 509 CXXXPPPPXPXXXPXXXPPXP 571
C PPPP P P PP P
Sbjct: 62 CPPPPPPPPPPMCPPPPPPMP 82
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = +1
Query: 508 MXXXPPXPXPXXXPXXXXPPXXXXXXXXXPXXXXXPPXGGXPXPPXP 648
M P P P P PP P PP P PP P
Sbjct: 39 MPCAAPMPMPMPMPVCPPPPPCPAQFCPPPPICPPPPPPPMPCPPPP 85
>U53338-1|AAA96189.2| 152|Caenorhabditis elegans Hypothetical
protein C05E11.6 protein.
Length = 152
Score = 28.3 bits (60), Expect = 7.9
Identities = 20/83 (24%), Positives = 36/83 (43%)
Frame = -2
Query: 427 LSTANLLFTLRSLVPYQGTKCKHGYNNNKKSKQTSSLVYGKIFKLCYFHGQKPLQCCVEN 248
LS L+ L SL + K N++K+ +T IF++ + + C
Sbjct: 10 LSLLVLILVLISLTDAHASSWKSILNSDKRM-ETKQHSLESIFRVRRTYIDENENCGSHE 68
Query: 247 ITSLRSVFPGVCSLFQELPSHFS 179
+ + ++ +C L EL SHF+
Sbjct: 69 LEMVHTIMDRICMLCHELRSHFA 91
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,989,711
Number of Sequences: 27780
Number of extensions: 323317
Number of successful extensions: 1067
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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