Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_H12
         (902 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   5.0  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   6.7  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   6.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +1

Query: 595 PXXXXXPPXGGXPXPPXP 648
           P     PP  G P PP P
Sbjct: 404 PAGGQLPPSAGAPMPPIP 421


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 312 TVKYSNCVTFMDRN 271
           T+ YSN VTF  RN
Sbjct: 300 TIMYSNGVTFPQRN 313


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 312 TVKYSNCVTFMDRN 271
           T+ YSN VTF  RN
Sbjct: 300 TIMYSNGVTFPQRN 313


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,126
Number of Sequences: 438
Number of extensions: 5031
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)