Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_H11
         (878 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1008 - 7987936-7988628,7988923-7989102                           33   0.23 
05_07_0066 + 27453611-27453627,27454729-27454872,27455998-274566...    33   0.30 
07_01_1201 - 11419851-11419913,11420090-11420311                       32   0.70 
12_02_1188 + 26801833-26802225                                         31   0.92 
10_01_0038 + 437738-438122,439215-439501,440111-440375,440687-44...    31   1.6  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.5  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.6  

>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -3

Query: 696 KGEGGQVSGKRQXRNRRAHEGAFQGETPG 610
           +G GG+V+G+   R+RR   GA++GE  G
Sbjct: 246 RGGGGEVNGEEAARSRRRRRGAWEGEEEG 274


>05_07_0066 +
           27453611-27453627,27454729-27454872,27455998-27456690,
           27457700-27458111,27458220-27458297,27458938-27458953,
           27459038-27459192
          Length = 504

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 721 AHAVGISVRCRSFAPSWAVCPKPPVQPXRCALIRVTIVLSSNPG 852
           A A G+ ++ RS AP+  + P P   P R + +RVT  L +  G
Sbjct: 224 AAAAGVKIQRRSSAPAEKLMPPPSTTPSRSSTLRVTSSLPARGG 267


>07_01_1201 - 11419851-11419913,11420090-11420311
          Length = 94

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = +3

Query: 534 LRPPDEHHKNRRSSQRWRN--PTGL*RYQAFPPGKLPRALSCSXPAAYRIPVR-LLPS 698
           L PP          Q+WR+  PTG   + +FP G LP A     PA  R P   L PS
Sbjct: 13  LLPPPPPLPALPQGQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQPATPLFPS 70


>12_02_1188 + 26801833-26802225
          Length = 130

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = -3

Query: 720 YEKAPRFPKGEGGQVSGKRQXRNRRAHEGAFQGETPGIFIVLSG 589
           +  APR   G GG  SGKR      AHEG  +G  P +++V  G
Sbjct: 23  FSPAPRRGGGGGGS-SGKRSSSAAAAHEGVPEGHVP-VYVVGEG 64


>10_01_0038 +
           437738-438122,439215-439501,440111-440375,440687-440784
          Length = 344

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 28/88 (31%), Positives = 36/88 (40%)
 Frame = -3

Query: 648 RAHEGAFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATRPFYGSWPFAGLLL 469
           R H+  F G   G    L G +   LS      R GGG     P+TR   G     G + 
Sbjct: 213 RGHDTVFDGVYVGRRWRLGGGSDGVLSSARSGGRGGGGDDSALPSTRS-GGKGDSGGSVA 271

Query: 468 TCSFLRYPLILWITVLPPLSELIPLAAA 385
           T S  R  +     + PPLS LI +A +
Sbjct: 272 TASPHRLQMAGNPRLSPPLSPLISIAGS 299


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +1

Query: 346 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 501
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 295 NESAN---ARGEAVCVLGALPLPRSLTRCAR 378
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,003,479
Number of Sequences: 37544
Number of extensions: 521497
Number of successful extensions: 1403
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1403
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)