Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_H09
         (945 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.72 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.95 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   2.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.8  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 22/81 (27%), Positives = 25/81 (30%)
 Frame = +3

Query: 492  PSXXGXSPGXPXXSGATPGPHPXXPXGPPXXPAPAXXXPPXXXXFPRGXXXXXXXXXXXX 671
            P     +P  P  SGA P P P      P  PAP+   PP       G            
Sbjct: 1143 PKPSVAAPPVPAPSGAPPVPKP--SVAAPPVPAPSSGIPPVPKP-AAGVPPVPPPSEAPP 1199

Query: 672  XXXXILXXXGXPPPXGPPPXP 734
                 +     PPP   PP P
Sbjct: 1200 VPKPSVGVPPVPPPSTAPPVP 1220



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +3

Query: 492  PSXXGXSPGXPXXSGATPGPHPXXPXGPPXXPAPAXXXPP 611
            P+     P  P  SGA P P    P G P  P P+   PP
Sbjct: 1067 PAPSSEIPSIPAPSGAPPVP---APSGIPPVPKPSVAAPP 1103



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
 Frame = +3

Query: 492  PSXXGXSPGXPXXSGATPGPHP-------XXPXGPPXXPAPAXXXPP 611
            P     +P  P  SGA P P P         P G P  P P+   PP
Sbjct: 1124 PKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP 1170



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
 Frame = +3

Query: 513  PGXPXXSGATPGPHP-------XXPXGPPXXPAPAXXXPP 611
            P  P  SGA P P P         P G P  P P+   PP
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 14/39 (35%), Positives = 15/39 (38%)
 Frame = +2

Query: 476 GXXGFPLXPXAXPRXPXXFRGYPRAPPXXPXRPPXGPXP 592
           G    P  P + P  P    G P APP  P  P   P P
Sbjct: 442 GAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.0 bits (47), Expect(2) = 2.8
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +3

Query: 510 SPGXPXXSGATPGPHPXXPXGPPXXPAPAXXXPP 611
           SP  P  +   P P P     PP  PAP    PP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPP--PAPIMGGPP 762



 Score = 22.6 bits (46), Expect(2) = 2.8
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 699 GXPPPXGPPPXPXG 740
           G PPP  PPP   G
Sbjct: 759 GGPPPPPPPPGVAG 772



 Score = 22.2 bits (45), Expect(2) = 7.7
 Identities = 12/36 (33%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
 Frame = +3

Query: 492 PSXXGXSPGXPXXSGATPGPHP--XXPXGPPXXPAP 593
           P+     P  P   G  P P P      GPP  P P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 21.8 bits (44), Expect(2) = 7.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 699 GXPPPXGPPP 728
           G PPP  PPP
Sbjct: 774 GPPPPPPPPP 783


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/34 (35%), Positives = 13/34 (38%)
 Frame = +3

Query: 492  PSXXGXSPGXPXXSGATPGPHPXXPXGPPXXPAP 593
            P     +P  P  S   P   P  P GPP  P P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,278,387
Number of Sequences: 5004
Number of extensions: 12549
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)