Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_H08
(866 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 128 8e-31
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 29 1.1
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 29 1.1
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 27 2.6
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 4.6
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 26 8.0
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 26 8.0
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 26 8.0
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 128 bits (310), Expect = 8e-31
Identities = 72/203 (35%), Positives = 117/203 (57%), Gaps = 4/203 (1%)
Frame = +1
Query: 133 KFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRML- 309
K+DL+ KI Q+LDRHL+FPLLEFL+ ++T+D ELLQAK ++L TNM DYV ++ L
Sbjct: 14 KYDLSQKIMQHLDRHLIFPLLEFLSLRQTHDPKELLQAKYDLLKDTNMTDYVANLWTNLH 73
Query: 310 --YPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPKTLINHLS 483
+ +ED ++R VL EL EL++ V+ +L +++ D++ + +D + HL
Sbjct: 74 GGHTDEDMANAFAEKRRSVLQELSELEEEVQGILGVLENPDLIAALR--QDKGQNLQHL- 130
Query: 484 TNKEYEFKIEMIDSMYRLXKYRYECGNYVESASYLYFCQLVMSPT*XELFVGSL-G*IG* 660
+ Y E I +Y+ +++Y CGNY ++ LY + EL + G
Sbjct: 131 -QEHYNITPERIAVLYKFAQFQYNCGNYGGASDLLYHFRAFSKD--PELNASATWGKFAS 187
Query: 661 RNLVXNWDGALDDLTQXREFIDN 729
L +WDGA+++L + RE +D+
Sbjct: 188 EILTVDWDGAMEELGKLREMVDS 210
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 148 FKIGQYLDRHLVFPLLEF-LAAKETYDQSELLQAKLEILSK 267
F I +YL +L+ P LEF L A E Q + A ++ SK
Sbjct: 1218 FHISKYLSSNLLLPFLEFLLTASEAEAQIPVTDASQKVSSK 1258
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +1
Query: 436 TIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRLXKYRYECGNY 567
T+ T+ D ++ HL+ +F + ++M++ +YRY N+
Sbjct: 180 TVATLGDLIGMVGHLNDTSGVDFNLNEYNAMWKTSEYRYVDFNF 223
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +1
Query: 247 KLEILSKTNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDD 426
K+ + S N I Y + +L P+E ++ RG+ + Q +++ E VL+
Sbjct: 188 KITLNSVVNSISYSSFFEELLITSYAKPKEALRTRGLAIVWNQRWKNSPESVLKARSEIT 247
Query: 427 VMK 435
V K
Sbjct: 248 VCK 250
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +1
Query: 421 DDVMKTIETMRDPKTLINHLSTNKE---YEFKIEMIDSMYRLXK 543
+DV+K + T+ PK +I L ++ +EF I+ ID ++ K
Sbjct: 3764 NDVLKKLITILSPKVIITKLDFERDTFVHEFGIDSIDLIWLASK 3807
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 25.8 bits (54), Expect = 8.0
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = +2
Query: 704 PNXESSSITVEPVPTGQXHAK---PLQXPD-LGWVPGSLFRVPSNHGQKDR 844
P+ + + VEP P+ Q P P+ W+PGS +P+N + +R
Sbjct: 340 PSQNAPARPVEPSPSIQPPNLLNLPTASPESTSWLPGSQTNIPANTNRSER 390
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +1
Query: 394 EPVLRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIE 513
+PV+R+ + I + + P+ L H S K+Y++ ++
Sbjct: 1947 KPVIRISHFHHTFEVISSKQRPRRLTIHGSDGKDYQYVLK 1986
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.8 bits (54), Expect = 8.0
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 286 VTDIRRMLYPEEDTPEEIIQRRGVVLSELQ-ELQDAVEPVL 405
VTDI+ +L + DTP ++ G + L+ +EP+L
Sbjct: 533 VTDIKEILPSQHDTPHNSVKLTGSSTTPASVSLRQMIEPLL 573
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,480,102
Number of Sequences: 5004
Number of extensions: 71145
Number of successful extensions: 193
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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