Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_H05
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0028 + 27782072-27782171,27782427-27782620                       35   0.074
11_08_0013 + 27629086-27629185,27629441-27629634                       35   0.074
08_02_1156 - 24760332-24761530,24762757-24763648                       32   0.52 
05_03_0244 + 10857139-10857516                                         32   0.52 
01_05_0135 + 18460416-18460482,18460614-18460942                       31   1.6  
11_01_0545 + 4308167-4308496                                           30   2.1  
08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224     30   2.8  
02_05_0930 - 32801737-32801936,32802038-32802107                       30   2.8  
03_02_0141 + 5867591-5867736,5867926-5868010,5868096-5868137,586...    29   3.7  
01_01_0559 - 4109690-4111003                                           28   8.5  

>11_08_0028 + 27782072-27782171,27782427-27782620
          Length = 97

 Score = 35.1 bits (77), Expect = 0.074
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +3

Query: 477 LENCDMRECDQSCRRIGFPGGVC---VNGRCKCDIIANNN 587
           L NCDM +C   C+  GF GG+C    N  C C   A  N
Sbjct: 45  LVNCDMNKCMSDCQIKGFNGGLCDGESNDHCCCTDEARTN 84



 Score = 34.3 bits (75), Expect = 0.13
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = +3

Query: 96  SILCFVSVLCTIHASVININIFNEGLNTNKTSIKLRNCDFTACDQLCRELGFPSGACDGE 275
           ++  F S++     +  + +    G     + + L NCD   C   C+  GF  G CDGE
Sbjct: 11  AVFFFTSLMVMATVNFSSGHTTQGGYGEMDSCMVLVNCDMNKCMSDCQIKGFNGGLCDGE 70

Query: 276 ---QCVCDNFLKT 305
               C C +  +T
Sbjct: 71  SNDHCCCTDEART 83


>11_08_0013 + 27629086-27629185,27629441-27629634
          Length = 97

 Score = 35.1 bits (77), Expect = 0.074
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +3

Query: 477 LENCDMRECDQSCRRIGFPGGVC---VNGRCKCDIIANNN 587
           L NCDM +C   C+  GF GG+C    N  C C   A  N
Sbjct: 45  LVNCDMNKCMSDCQIKGFNGGLCDGESNDHCCCTDEARTN 84



 Score = 34.3 bits (75), Expect = 0.13
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = +3

Query: 96  SILCFVSVLCTIHASVININIFNEGLNTNKTSIKLRNCDFTACDQLCRELGFPSGACDGE 275
           ++  F S++     +  + +    G     + + L NCD   C   C+  GF  G CDGE
Sbjct: 11  AVFFFTSLMVMATVNFSSGHTTQGGYGEMDSCMVLVNCDMNKCMSDCQIKGFNGGLCDGE 70

Query: 276 ---QCVCDNFLKT 305
               C C +  +T
Sbjct: 71  SNDHCCCTDEART 83


>08_02_1156 - 24760332-24761530,24762757-24763648
          Length = 696

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 243 LGFPSGACDGEQCVCDNFLKTRGSRTKTDNQ 335
           LG  S  CDG+Q VCD +L TRG   ++  Q
Sbjct: 652 LGTTSNRCDGDQIVCD-YLSTRGITDESTRQ 681


>05_03_0244 + 10857139-10857516
          Length = 125

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 27/106 (25%), Positives = 44/106 (41%)
 Frame = +3

Query: 471 STLENCDMRECDQSCRRIGFPGGVCVNGRCKCDIIANNNIADLDGDRSSLKDCNSRGCDQ 650
           S+  +C  +     C  +G PG  C  GRC            +D   S  + C   GC++
Sbjct: 39  SSFYSCSKKSAAAVCLAVGSPGATCCGGRC------------VDTGASG-EHCG--GCNK 83

Query: 651 SCRRIGFPGGVCVNGRCKCDIIANNNIADLDEDRSSLKDCNXRGCD 788
           +C+     G  C  GRC  D++++ +      ++ S K C    CD
Sbjct: 84  ACKH----GRSCCGGRC-VDLLSDRDNCGSCSNQCSNK-CTYGFCD 123


>01_05_0135 + 18460416-18460482,18460614-18460942
          Length = 131

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 579 NNNIADLDGDRSSLKDCNSRGCDQSCRRIGFPGGVCVNGRCKC 707
           + + +D+DGD+S++  C+     Q C    FPG  C   R +C
Sbjct: 23  SESTSDMDGDKSTVDLCSESSGGQYC---CFPGNGCYPDRAQC 62


>11_01_0545 + 4308167-4308496
          Length = 109

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 174 NTNKTSIKLRNCDFTACDQLCRELGF-PSGAC 266
           +T  T I +  CD T C   CR+LG+ P  AC
Sbjct: 56  DTYATCIPVAACDDTGCAIRCRDLGYNPGSAC 87


>08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224
          Length = 787

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = +3

Query: 168 GLNTNKTSIKLRNCDFTACDQLCRELGFPSGACDGEQCVCDNFLKTRGSRTKTDNQLPQL 347
           GL ++ +SI  R C   +CDQ   +LG        +   CD+F   +   T+    L  L
Sbjct: 28  GLTSDSSSI--RRCRHVSCDQATIDLGIALIKASIDGPACDSF---KCGTTEERGILVCL 82

Query: 348 DCTTSEC 368
           DC +S C
Sbjct: 83  DCGSSLC 89


>02_05_0930 - 32801737-32801936,32802038-32802107
          Length = 89

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 486 CDMRECDQSCRRIGFPGGV--CVNGRCKCD 569
           CD   C  +C+R  + GG+  CV  +CKCD
Sbjct: 44  CDSGLCVANCQR-QYRGGIGQCVGNKCKCD 72



 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +3

Query: 627 CNSRGCDQSCRRIGFPGGV--CVNGRCKCD 710
           C+S  C  +C+R  + GG+  CV  +CKCD
Sbjct: 44  CDSGLCVANCQR-QYRGGIGQCVGNKCKCD 72


>03_02_0141 +
           5867591-5867736,5867926-5868010,5868096-5868137,
           5868255-5868423,5868792-5868844,5869022-5869240,
           5869507-5869553,5869732-5869786
          Length = 271

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 280 HCSPSHAPLGNPSSRQSWSQAVKSQLRN 197
           H +PS +P  +P+S + W  A +  LRN
Sbjct: 11  HAAPSSSPSPSPASLRQWRPAAQRNLRN 38


>01_01_0559 - 4109690-4111003
          Length = 437

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = -3

Query: 301 LRKLSQTHCSPSHAPLGNPSSRQSWSQAVKSQLRNLIEVLFVFKPSLKMLMFITDACI-V 125
           + +L Q    P+      P  R SW     +Q+  LIE L VFKP+L   +   D  +  
Sbjct: 7   VERLGQRRVVPAEPTPAGPL-RLSWLDRYPTQMA-LIESLHVFKPALDRAIGGDDVAVGP 64

Query: 124 HKTLTKHSIDSIVTSYPV 71
            +T+ +    ++V  YP+
Sbjct: 65  ARTIERALARALVHYYPL 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,103,834
Number of Sequences: 37544
Number of extensions: 489044
Number of successful extensions: 1313
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)