Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_H04
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.66 
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    28   2.0  
SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch...    27   2.7  
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    26   6.1  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   6.1  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    26   8.1  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    26   8.1  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 21/49 (42%), Positives = 29/49 (59%)
 Frame = -3

Query: 429 TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKPIAFKSSSWVSPSEA 283
           TY+   I SS+ L+   S L++++S  +ASSS  PI   SSS VS   A
Sbjct: 665 TYSSSVIPSSSTLVSSSSSLIVSSS-PVASSSSSPIP-SSSSLVSTYSA 711


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 359 FASKSRDLRSIKGVELKMANKVYVHDGGKLDE 454
           FA + ++L   KGV+L M +   +HDG  L +
Sbjct: 79  FALRMKELADFKGVDLLMVDTGDLHDGNGLSD 110


>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 469

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 466 RFQGTSSIRTSKILISRRIQSQLSLLTIG*KKIPITALR 582
           RFQ T SIRT        I +QL + +IG K +P+  ++
Sbjct: 308 RFQITDSIRTDAESKFTTIPAQLFIRSIGYKSMPLPGMK 346


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 645 FKGAWSSKFDERLTSEP*LLREQRQNNQ 728
           F+G+ SSKF E + SE   + +QR +N+
Sbjct: 175 FRGSGSSKFYEAIKSETDEIEKQRYSNK 202


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +1

Query: 145 NLSNVLKNGNDNFTARMFTEVVKNNPGXKHCPLGI 249
           N  N+LK  ND   AR +TE V      K  P GI
Sbjct: 56  NSQNLLKQLNDEMKARKYTETVATFSSLK--PFGI 88


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +3

Query: 72  DAGHKHEDNHLFVYYRHRGNGSRHKSL*CAQKW 170
           D   K E   +F YY  R  GS  +   CA  W
Sbjct: 653 DMSWKKEVRRIFQYYTDRTQGSSIEEKRCAMTW 685


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 519 NTVAAKSINDWVEENTNNRIKDLVNPDSLS 608
           +T +A SIN W+ +NT   I+ + N  SLS
Sbjct: 9   STSSASSIN-WIPKNTKTSIESVSNTISLS 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,414,914
Number of Sequences: 5004
Number of extensions: 68564
Number of successful extensions: 185
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)