Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_H02
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0163 + 1135592-1135623,1135718-1135816,1135904-1135960,113... 29 0.82
03_01_0515 - 3864796-3865425 25 1.8
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 28 2.1
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 29 4.1
11_06_0188 + 21036465-21036627,21036735-21036883,21037369-210374... 29 5.4
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 5.4
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 25 5.7
03_02_0514 + 9038606-9039790,9040211-9040432,9040548-9040655,904... 28 7.2
07_03_0177 - 14770777-14772045 23 8.2
07_01_0080 + 587674-588510 24 8.6
>02_01_0163 +
1135592-1135623,1135718-1135816,1135904-1135960,
1136053-1136116,1136174-1136392,1138562-1138945
Length = 284
Score = 29.5 bits (63), Expect(2) = 0.82
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 686 NXTPPXXPLPXXPXXXXQPPPP 751
N PP P P P QPPPP
Sbjct: 174 NPAPPPVPSPSAPPLPPQPPPP 195
Score = 20.6 bits (41), Expect(2) = 0.82
Identities = 7/16 (43%), Positives = 8/16 (50%)
Frame = +2
Query: 545 PPPXXXXSXXSPPPXP 592
PPP +PPP P
Sbjct: 166 PPPRTRQVNPAPPPVP 181
>03_01_0515 - 3864796-3865425
Length = 209
Score = 24.6 bits (51), Expect(2) = 1.8
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = +2
Query: 695 PPXXPLPXXPXXXXQPPPP 751
PP P P P PPPP
Sbjct: 102 PPPSPPPPSPVKSSPPPPP 120
Score = 24.2 bits (50), Expect(2) = 1.8
Identities = 18/67 (26%), Positives = 19/67 (28%)
Frame = +2
Query: 392 PXGXGXAPPXPFXXTNTXXXXXXXXGXXXXPXPPPPGGXXXKLFXFXFXXXPPPXXXXSX 571
P PP + T G P PPPP PPP S
Sbjct: 42 PPTEASPPPLAPPPSVTSSPPPPAAGPLMPPPPPPPSVTSSP--PPPPLPPPPPPPAASP 99
Query: 572 XSPPPXP 592
PPP P
Sbjct: 100 PPPPPSP 106
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 27.9 bits (59), Expect(2) = 2.1
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 695 PPXXPLPXXPXXXXQPPPPXXXXPR 769
PP P P P PPPP PR
Sbjct: 929 PPPPPPPGKPGGPPPPPPPPGSLPR 953
Score = 20.6 bits (41), Expect(2) = 2.1
Identities = 7/16 (43%), Positives = 7/16 (43%)
Frame = +2
Query: 545 PPPXXXXSXXSPPPXP 592
PPP PPP P
Sbjct: 920 PPPPRPPGAPPPPPPP 935
>06_03_0867 +
25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 692 TPPXXPLPXXPXXXXQPPPPXXXXP 766
TPP P P P +PPPP P
Sbjct: 90 TPPPPPPPPLPQHRLEPPPPHYGFP 114
>11_06_0188 +
21036465-21036627,21036735-21036883,21037369-21037484,
21037939-21038101
Length = 196
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = -2
Query: 591 GXGGGXKXXFXXXGGGXFXKXXKKSFXXXPPGGGGXG 481
G GG + F GGG F PP GGG G
Sbjct: 153 GGRGGGRGGFRGRGGGGFRGRGAPRGRGGPPRGGGRG 189
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 28.7 bits (61), Expect = 5.4
Identities = 28/124 (22%), Positives = 28/124 (22%), Gaps = 8/124 (6%)
Frame = +2
Query: 404 GXAPPXPFXXTNTXXXXXXXXGXXXXPXPPPPGGXXXKL------FXFXFXXXPPPXXXX 565
G APP P G P PPP GG PPP
Sbjct: 1096 GVAPPPPSIGAGAPPPPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVG 1155
Query: 566 SXXSPP--PXPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKNXTPPXXPLPXXPXXXXQ 739
PP P P TPP P P P
Sbjct: 1156 GLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPG 1215
Query: 740 PPPP 751
PPP
Sbjct: 1216 GPPP 1219
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 24.6 bits (51), Expect(2) = 5.7
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +2
Query: 695 PPXXPLPXXPXXXXQPPP 748
PP PLP P PPP
Sbjct: 1183 PPPPPLPSGPPPQPAPPP 1200
Score = 22.2 bits (45), Expect(2) = 5.7
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +2
Query: 545 PPPXXXXSXXSPPPXP 592
PPP S PPP P
Sbjct: 1171 PPPPLSPSLPPPPPPP 1186
>03_02_0514 +
9038606-9039790,9040211-9040432,9040548-9040655,
9041608-9041802,9041905-9042153,9042525-9042672,
9042673-9042779,9043311-9043475,9044506-9045948
Length = 1273
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -2
Query: 765 GXXXXGGGGWXXXXGXXGRGXXGGVXFF 682
G GGGGW G G G GG F+
Sbjct: 97 GPLGGGGGGWGAGGGGGGGGGGGGGGFW 124
>07_03_0177 - 14770777-14772045
Length = 422
Score = 23.4 bits (48), Expect(2) = 8.2
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = -2
Query: 591 GXGGGXKXXFXXXGGGXFXKXXKKSFXXXPPGGGGXG 481
G GGG GG F K P GGG G
Sbjct: 134 GKGGGIGGGIGHGAGGGFGKGGGLGGGIGPGIGGGYG 170
Score = 23.0 bits (47), Expect(2) = 8.2
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = -2
Query: 765 GXXXXGGGGWXXXXGXXGRGXXGGV 691
G GGGG G G G GGV
Sbjct: 89 GGGGLGGGGGGGLGGGGGFGKGGGV 113
>07_01_0080 + 587674-588510
Length = 278
Score = 24.2 bits (50), Expect(2) = 8.6
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +2
Query: 545 PPPXXXXSXXSPPPXP 592
PPP S SPPP P
Sbjct: 93 PPPPPPPSSGSPPPPP 108
Score = 22.2 bits (45), Expect(2) = 8.6
Identities = 8/19 (42%), Positives = 9/19 (47%)
Frame = +2
Query: 692 TPPXXPLPXXPXXXXQPPP 748
+PP P P P PPP
Sbjct: 103 SPPPPPPPPPPPPPPPPPP 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,806,935
Number of Sequences: 37544
Number of extensions: 301361
Number of successful extensions: 1102
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -