Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_H02
(772 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 1.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 1.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 1.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 26 2.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 26 2.6
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 28 8.5
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 27.9 bits (59), Expect(2) = 1.4
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +2
Query: 482 PXPPPPGGXXXKLFXFXFXXXPPPXXXXSXXSPPPXP 592
P PPPPGG PPP PPP P
Sbjct: 743 PPPPPPGGLPP-----ISGGPPPPPPPPGGCPPPPPP 774
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +2
Query: 482 PXPPPPGGXXXKLFXFXFXXXPPPXXXXSXXSPPPXP 592
P PPPPGG PPP PPP P
Sbjct: 760 PPPPPPGGCPPP------PPPPPPGGFKGGPPPPPPP 790
Score = 21.0 bits (42), Expect(2) = 1.4
Identities = 8/19 (42%), Positives = 8/19 (42%)
Frame = +2
Query: 695 PPXXPLPXXPXXXXQPPPP 751
PP P P PPPP
Sbjct: 770 PPPPPPPPGGFKGGPPPPP 788
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 27.9 bits (59), Expect(2) = 1.4
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +2
Query: 482 PXPPPPGGXXXKLFXFXFXXXPPPXXXXSXXSPPPXP 592
P PPPPGG PPP PPP P
Sbjct: 743 PPPPPPGGLPP-----ISGGPPPPPPPPGGCPPPPPP 774
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +2
Query: 482 PXPPPPGGXXXKLFXFXFXXXPPPXXXXSXXSPPPXP 592
P PPPPGG PPP PPP P
Sbjct: 760 PPPPPPGGCPPP------PPPPPPGGFKGGPPPPPPP 790
Score = 21.0 bits (42), Expect(2) = 1.4
Identities = 8/19 (42%), Positives = 8/19 (42%)
Frame = +2
Query: 695 PPXXPLPXXPXXXXQPPPP 751
PP P P PPPP
Sbjct: 770 PPPPPPPPGGFKGGPPPPP 788
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 27.9 bits (59), Expect(2) = 1.4
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +2
Query: 482 PXPPPPGGXXXKLFXFXFXXXPPPXXXXSXXSPPPXP 592
P PPPPGG PPP PPP P
Sbjct: 326 PPPPPPGGLPP-----ISGGPPPPPPPPGGCPPPPPP 357
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +2
Query: 482 PXPPPPGGXXXKLFXFXFXXXPPPXXXXSXXSPPPXP 592
P PPPPGG PPP PPP P
Sbjct: 343 PPPPPPGGCPPP------PPPPPPGGFKGGPPPPPPP 373
Score = 21.0 bits (42), Expect(2) = 1.4
Identities = 8/19 (42%), Positives = 8/19 (42%)
Frame = +2
Query: 695 PPXXPLPXXPXXXXQPPPP 751
PP P P PPPP
Sbjct: 353 PPPPPPPPGGFKGGPPPPP 371
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 25.8 bits (54), Expect(2) = 2.6
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 692 TPPXXPLPXXPXXXXQPPPP 751
TP P+P P +PPPP
Sbjct: 281 TPMPPPMPPTPGMTPRPPPP 300
Score = 22.2 bits (45), Expect(2) = 2.6
Identities = 10/35 (28%), Positives = 13/35 (37%)
Frame = +2
Query: 488 PPPPGGXXXKLFXFXFXXXPPPXXXXSXXSPPPXP 592
PPP G + + PPP + PP P
Sbjct: 255 PPPLMGMAQSGYQGQYPPVPPPPPSVTPMPPPMPP 289
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 25.8 bits (54), Expect(2) = 2.6
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 692 TPPXXPLPXXPXXXXQPPPP 751
TP P+P P +PPPP
Sbjct: 271 TPMPPPMPPTPGMTPRPPPP 290
Score = 22.2 bits (45), Expect(2) = 2.6
Identities = 10/35 (28%), Positives = 13/35 (37%)
Frame = +2
Query: 488 PPPPGGXXXKLFXFXFXXXPPPXXXXSXXSPPPXP 592
PPP G + + PPP + PP P
Sbjct: 245 PPPLMGMAQSGYQGQYPPVPPPPPSVTPMPPPMPP 279
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +2
Query: 482 PXPPPPGGXXXKLFXFXFXXXPPPXXXXSXXSPPP 586
P PP PGG F PPP PPP
Sbjct: 75 PPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPP 109
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,935,297
Number of Sequences: 27780
Number of extensions: 175205
Number of successful extensions: 491
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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