Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_H01
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.083
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.33 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    28   1.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   5.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.083
 Identities = 16/35 (45%), Positives = 16/35 (45%)
 Frame = +3

Query: 651 PPXXXXGXPPPPXXXXPPXXXXXXXPPPXXXPPPP 755
           PP    G PPPP    PP       PPP   PPPP
Sbjct: 753 PPAPIMGGPPPPPP--PPGVAGAGPPPP--PPPPP 783



 Score = 29.9 bits (64), Expect = 0.44
 Identities = 16/52 (30%), Positives = 16/52 (30%)
 Frame = +3

Query: 639 PXXXPPXXXXGXPPPPXXXXPPXXXXXXXPPPXXXPPPPXXXXXXXXXXXPP 794
           P   PP      P P     PP       PPP   PPPP           PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP--PPPPPGVAGAGPPPPPPP 781


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
 Frame = +3

Query: 651  PPXXXXGXPPPPXXXXPPXXXXXXXPP-PXXXPPPP 755
            PP      PPPP    PP       P  P   PPPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 29.1 bits (62), Expect = 0.77
 Identities = 13/42 (30%), Positives = 13/42 (30%)
 Frame = +3

Query: 630  PXXPXXXPPXXXXGXPPPPXXXXPPXXXXXXXPPPXXXPPPP 755
            P  P   PP       PP      P       PPP   PP P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMP 1724



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +2

Query: 641  AXXPPPXXXGXPXPPXXXXPPXXXXXXPPP 730
            A  PPP     P PP     P      PPP
Sbjct: 1704 APTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733



 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/42 (28%), Positives = 12/42 (28%)
 Frame = +3

Query: 630  PXXPXXXPPXXXXGXPPPPXXXXPPXXXXXXXPPPXXXPPPP 755
            P      PP      PPPP     P       PPP      P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 369 SIYHCDRSFSNISNTIHSISFVNA 298
           S++    +FSNI++ IH ISF NA
Sbjct: 800 SLFRWSATFSNIADGIHRISFNNA 823


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +3

Query: 681 PPXXXXPPXXXXXXXPPPXXXPPPP 755
           PP    PP       PP    PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +2

Query: 653 PPXXXGXPXPPXXXXPPXXXXXXPPP 730
           PP     P PP    PP      PPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,230,997
Number of Sequences: 5004
Number of extensions: 40224
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)