Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_G23
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc...    93   4e-20
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa...    93   4e-20
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    26   6.2  

>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 93.5 bits (222), Expect = 4e-20
 Identities = 54/105 (51%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
 Frame = +2

Query: 176 HTFSLHSMTHSFMLLIYPAGKLSPV-FTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLG 352
           H F+  S   +F+ +    GK + V  TGGMKVK DRDE+SPYAAMLAAQD A KCK +G
Sbjct: 20  HIFA--SFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAMLAAQDAAAKCKEVG 77

Query: 353 ITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGXIEDVTP 487
           ITALHIK+RA            AQ          M+IG IEDVTP
Sbjct: 78  ITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTP 122



 Score = 69.7 bits (163), Expect = 5e-13
 Identities = 31/40 (77%), Positives = 35/40 (87%)
 Frame = +1

Query: 133 LGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARV 252
           +GPQ   GE VFGVAHIFASFNDTFVH+TDL+G+ETI RV
Sbjct: 5   VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRV 44


>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 93.5 bits (222), Expect = 4e-20
 Identities = 54/105 (51%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
 Frame = +2

Query: 176 HTFSLHSMTHSFMLLIYPAGKLSPV-FTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLG 352
           H F+  S   +F+ +    GK + V  TGGMKVK DRDE+SPYAAMLAAQD A KCK +G
Sbjct: 20  HIFA--SFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAMLAAQDAAAKCKEVG 77

Query: 353 ITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGXIEDVTP 487
           ITALHIK+RA            AQ          M+IG IEDVTP
Sbjct: 78  ITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTP 122



 Score = 69.7 bits (163), Expect = 5e-13
 Identities = 31/40 (77%), Positives = 35/40 (87%)
 Frame = +1

Query: 133 LGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARV 252
           +GPQ   GE VFGVAHIFASFNDTFVH+TDL+G+ETI RV
Sbjct: 5   VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRV 44


>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 143 WGPRVTWTSSLATLFFL 93
           +GPR+ WTSS ++L F+
Sbjct: 304 FGPRIFWTSSQSSLMFV 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,668,774
Number of Sequences: 5004
Number of extensions: 46543
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)