Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_G23
(888 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425... 98 9e-21
02_04_0100 - 19730137-19730237,19731215-19731344,19731419-197315... 89 4e-18
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335... 87 2e-17
02_01_0045 + 307058-307552,308670-308716,308779-308866,309664-30... 49 4e-06
08_02_0250 + 14772746-14773037,14773141-14773203,14773458-147736... 30 2.8
07_01_0032 + 258788-259201,259297-259462,260938-261443 29 6.5
03_02_0919 - 12392471-12392636,12392740-12392931,12393366-123934... 28 8.6
>04_03_0871 -
20441689-20441756,20442220-20442349,20442422-20442507,
20444271-20444316,20444425-20444547,20445302-20445370
Length = 173
Score = 97.9 bits (233), Expect = 9e-21
Identities = 50/78 (64%), Positives = 54/78 (69%)
Frame = +2
Query: 254 TGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXX 433
TGGMKVKADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRA AQ
Sbjct: 79 TGGMKVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSAL 138
Query: 434 XXXXXXXMKIGXIEDVTP 487
MKIG IEDVTP
Sbjct: 139 RALARSGMKIGRIEDVTP 156
Score = 77.0 bits (181), Expect = 2e-14
Identities = 37/53 (69%), Positives = 42/53 (79%)
Frame = +1
Query: 94 RKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARV 252
+K + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+
Sbjct: 27 KKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRI 78
>02_04_0100 -
19730137-19730237,19731215-19731344,19731419-19731504,
19732410-19732455,19732558-19732680,19732779-19732781
Length = 162
Score = 89.0 bits (211), Expect = 4e-18
Identities = 46/75 (61%), Positives = 50/75 (66%)
Frame = +2
Query: 254 TGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXX 433
TGGMKVKADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRA AQ
Sbjct: 57 TGGMKVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSAL 116
Query: 434 XXXXXXXMKIGXIED 478
MKIG I D
Sbjct: 117 RALARSGMKIGRIAD 131
Score = 77.8 bits (183), Expect = 1e-14
Identities = 37/56 (66%), Positives = 42/56 (75%)
Frame = +1
Query: 85 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARV 252
M+ RK +E VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+
Sbjct: 1 MSGRKKTREPKEENVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRI 56
>02_01_0469 -
3359156-3359500,3359595-3359680,3359766-3359811,
3359897-3360016,3360622-3360624
Length = 199
Score = 87.0 bits (206), Expect = 2e-17
Identities = 45/73 (61%), Positives = 49/73 (67%)
Frame = +2
Query: 254 TGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXX 433
TGGMKVKADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRA AQ
Sbjct: 56 TGGMKVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSAL 115
Query: 434 XXXXXXXMKIGXI 472
MKIG I
Sbjct: 116 RALARSGMKIGRI 128
Score = 80.2 bits (189), Expect = 2e-15
Identities = 39/56 (69%), Positives = 44/56 (78%)
Frame = +1
Query: 85 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARV 252
M+ RK + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+
Sbjct: 1 MSKRKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRI 55
>02_01_0045 +
307058-307552,308670-308716,308779-308866,309664-309756,
309788-309950,310554-310627,310889-310927
Length = 332
Score = 49.2 bits (112), Expect = 4e-06
Identities = 22/29 (75%), Positives = 25/29 (86%)
Frame = +2
Query: 257 GGMKVKADRDEASPYAAMLAAQDVAEKCK 343
GGMK+KAD DE+SPYAAML +QDVA CK
Sbjct: 213 GGMKIKADCDESSPYAAMLVSQDVALCCK 241
Score = 28.7 bits (61), Expect = 6.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 257 GGMKVKADRDEASPYAAMLAAQDVA 331
GGM +K+D DE SP+ + + D++
Sbjct: 168 GGMNIKSDCDEPSPHCSCVGQTDIS 192
>08_02_0250 +
14772746-14773037,14773141-14773203,14773458-14773621,
14774126-14774220,14774517-14774728,14774972-14775009,
14775131-14775424,14775510-14775617
Length = 421
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +1
Query: 358 GLAHKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEDWP 468
G H PC+ W + W WC SG C + WP
Sbjct: 345 GKPHGWPCWGW-DGAEMWLWCQSKNSGHC---HIGWP 377
>07_01_0032 + 258788-259201,259297-259462,260938-261443
Length = 361
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 154 GETVFGVAHIFASFNDTFVHVTDLSGRETIARVH 255
G TV + IFA FN T + LSG TI + H
Sbjct: 169 GATVNDLLTIFAKFNFTAKDLAVLSGAHTIGKAH 202
>03_02_0919 - 12392471-12392636,12392740-12392931,12393366-12393463,
12393719-12394219,12394287-12394532,12395627-12396029,
12396155-12396348,12396755-12396925,12397064-12397366,
12397463-12397520,12397678-12397757,12398910-12398987,
12399530-12399613,12399692-12399757,12399908-12399980,
12400080-12400249,12400368-12400427,12400632-12400679,
12401217-12401255,12401364-12401372
Length = 1012
Score = 28.3 bits (60), Expect = 8.6
Identities = 22/67 (32%), Positives = 30/67 (44%)
Frame = -2
Query: 356 LCQEFCISLLHPVPPT*QRRVTLHHGQPSPSCHQ*TRAIVSRPDKSVT*TNVSLNEAKMC 177
+C E + LLHP P + H QP SC Q + I P TN +L E +M
Sbjct: 815 VCLETGLRLLHPFMPYITEELWQHLPQPKYSCRQDSIMISEYPSLVEEWTNDNL-ENEMD 873
Query: 176 ATPNTVS 156
+TV+
Sbjct: 874 IVLDTVN 880
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,274,595
Number of Sequences: 37544
Number of extensions: 367072
Number of successful extensions: 708
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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