Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_G23
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal prote...    97   1e-20
AJ276028-1|CAC81655.1|  816|Caenorhabditis elegans TRP homlogous...    28   7.8  
AF040654-5|AAN65302.2|  816|Caenorhabditis elegans Trp (transien...    28   7.8  
AF040654-4|AAN65303.2|  886|Caenorhabditis elegans Trp (transien...    28   7.8  

>U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 14 protein.
          Length = 152

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 50/78 (64%), Positives = 53/78 (67%)
 Frame = +2

Query: 254 TGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXX 433
           TGGMKVKADRDE+SPYAAMLAAQDVA++CK LGI ALHIKLRA            AQ   
Sbjct: 58  TGGMKVKADRDESSPYAAMLAAQDVADRCKQLGINALHIKLRATGGTRTKTPGPGAQSAL 117

Query: 434 XXXXXXXMKIGXIEDVTP 487
                  MKIG IEDVTP
Sbjct: 118 RALARAGMKIGRIEDVTP 135



 Score = 84.6 bits (200), Expect = 8e-17
 Identities = 40/57 (70%), Positives = 46/57 (80%), Gaps = 1/57 (1%)
 Frame = +1

Query: 85  MAP-RKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARV 252
           MAP RK K  +E+  V+LGPQ   GE +FGVAHIFASFNDTFVH+TD+SGRETI RV
Sbjct: 1   MAPARKGKAKEEQAVVSLGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRV 57


>AJ276028-1|CAC81655.1|  816|Caenorhabditis elegans TRP homlogous
           cation channel proteinprotein.
          Length = 816

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -2

Query: 353 CQEFCISLLHPVPPT*QRRVTLHHGQPSPSCHQ*TRAIVSRPDK-SVT*TNVSLNEAKMC 177
           CQ+FC+ +L  V  + +  V L+H   + + H  T A    P+K +     + L++ +  
Sbjct: 249 CQKFCVHMLDQVRGSKELEVVLNH--TTNAWHDVTSANYGNPEKLARLKLAIQLSQKRFV 306

Query: 176 ATPN 165
           A PN
Sbjct: 307 AHPN 310


>AF040654-5|AAN65302.2|  816|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 2, isoform a
           protein.
          Length = 816

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -2

Query: 353 CQEFCISLLHPVPPT*QRRVTLHHGQPSPSCHQ*TRAIVSRPDK-SVT*TNVSLNEAKMC 177
           CQ+FC+ +L  V  + +  V L+H   + + H  T A    P+K +     + L++ +  
Sbjct: 249 CQKFCVHMLDQVRGSKELEVVLNH--TTNAWHDVTSANYGNPEKLARLKLAIQLSQKRFV 306

Query: 176 ATPN 165
           A PN
Sbjct: 307 AHPN 310


>AF040654-4|AAN65303.2|  886|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 2, isoform b
           protein.
          Length = 886

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -2

Query: 353 CQEFCISLLHPVPPT*QRRVTLHHGQPSPSCHQ*TRAIVSRPDK-SVT*TNVSLNEAKMC 177
           CQ+FC+ +L  V  + +  V L+H   + + H  T A    P+K +     + L++ +  
Sbjct: 249 CQKFCVHMLDQVRGSKELEVVLNH--TTNAWHDVTSANYGNPEKLARLKLAIQLSQKRFV 306

Query: 176 ATPN 165
           A PN
Sbjct: 307 AHPN 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,539,093
Number of Sequences: 27780
Number of extensions: 297114
Number of successful extensions: 670
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)