Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_G22
(901 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89... 85 5e-17
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 24 3.2
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 3.8
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799... 29 3.8
03_02_0719 + 10654842-10654977,10655039-10655124,10655226-106570... 29 6.7
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 29 6.7
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365... 28 8.8
07_01_0015 + 108338-109186 28 8.8
04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067 28 8.8
01_07_0120 + 41185884-41186127,41187228-41187310,41188596-411886... 28 8.8
>08_01_0113 +
897970-898038,898148-898271,898811-898896,898996-899049
Length = 110
Score = 85.4 bits (202), Expect = 5e-17
Identities = 47/111 (42%), Positives = 60/111 (54%)
Frame = +2
Query: 125 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 304
+S +E+AC +ALIL DD + +T EKI+T++KAA + VE YWPGLFAK LE +V DLI
Sbjct: 1 MSSSEVACTLAALILHDDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLIL 60
Query: 305 NIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 457
++GSG SDDDMGF LFD
Sbjct: 61 SVGSG-GGAAPVAAAAAPAAGGGAAAAPAAEEKKEEAKEESDDDMGFSLFD 110
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 24.2 bits (50), Expect(2) = 3.2
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +2
Query: 539 NKLNXXPPPXPPXXPP 586
NK PPP PP PP
Sbjct: 557 NKPAFSPPPPPPPPPP 572
Score = 23.8 bits (49), Expect(2) = 3.2
Identities = 8/19 (42%), Positives = 9/19 (47%)
Frame = +2
Query: 560 PPXPPXXPPXXXTAAADPP 616
PP PP PP + PP
Sbjct: 602 PPPPPPPPPILPNRSVPPP 620
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 557 PPPXPPXXPPXXXTAAADPP 616
PPP PP PP TA PP
Sbjct: 356 PPPPPPPPPPKLNTAPKPPP 375
>02_02_0220 -
7992124-7992351,7992458-7992562,7993499-7993711,
7993937-7994196,7994425-7994701,7995226-7995371,
7995519-7995903,7996680-7996964
Length = 632
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +2
Query: 89 GLRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKIST 211
G+R+LA+ V+K + S +L+ +DVA+TG+ ++T
Sbjct: 249 GIRKLAQIFQSSVAKKKAVGKKSKALLLGEDVAITGDCVTT 289
>03_02_0719 +
10654842-10654977,10655039-10655124,10655226-10657001,
10657782-10657926,10658017-10658735
Length = 953
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -2
Query: 612 GSAAAVXXXGGXXGGXGGGXXFNLF 538
G A GG GG GGG FNLF
Sbjct: 6 GGAKIGGGGGGGGGGGGGGGLFNLF 30
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 557 PPPXPPXXPPXXXTAAADPPLXEG*XXP 640
PPP PP PP PP+ +G P
Sbjct: 360 PPPPPPPPPPPPRPPPPPPPIKKGAPPP 387
>07_03_0111 +
13535912-13535972,13536081-13536142,13536418-13536510,
13537577-13537649,13537876-13538265,13538337-13538404,
13539334-13539375,13540211-13540735,13540817-13540974,
13541078-13541636,13542438-13542500,13542579-13542680,
13542779-13543096,13543175-13543267,13543489-13543590,
13543678-13543782,13544190-13544323,13545097-13545280,
13545701-13545832,13546215-13546327,13546468-13546558,
13547138-13549339
Length = 1889
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 560 PPXPPXXPPXXXTAAADP 613
PP PP PP AAADP
Sbjct: 123 PPPPPPPPPSPKDAAADP 140
>07_01_0015 + 108338-109186
Length = 282
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 557 PPPXPPXXPPXXXTAAADP 613
PPP PP PP AAA P
Sbjct: 105 PPPPPPPPPPLLPAAAAAP 123
>04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067
Length = 1064
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 557 PPPXPPXXPPXXXTAAADPPL 619
PPP PP PP TA PL
Sbjct: 161 PPPPPPPPPPVAATAQQQQPL 181
>01_07_0120 +
41185884-41186127,41187228-41187310,41188596-41188647,
41188729-41188854,41188967-41189049,41189308-41189490,
41189901-41190237,41190607-41190750,41190854-41190939,
41191069-41191113
Length = 460
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -2
Query: 615 GGSAAAVXXXGGXXGGXGGG 556
GG AAA GG GG GGG
Sbjct: 15 GGGAAATAAAGGGGGGGGGG 34
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,882,436
Number of Sequences: 37544
Number of extensions: 457520
Number of successful extensions: 4170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3692
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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