Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_G22
(901 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal pro... 112 3e-25
U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal prote... 109 3e-24
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 30 2.0
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z81030-5|CAB02709.1| 324|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 29 6.0
U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical pr... 29 6.0
U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical pr... 29 6.0
AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical ... 29 6.0
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 24 8.2
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 24 8.3
>AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal
protein, acidic protein 1 protein.
Length = 111
Score = 112 bits (270), Expect = 3e-25
Identities = 58/112 (51%), Positives = 70/112 (62%)
Frame = +2
Query: 122 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 301
M S ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EPYWPGLFAKALEG++V++LI
Sbjct: 1 MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLI 60
Query: 302 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 457
T++ SG SDDDMGFGLFD
Sbjct: 61 TSVSSGA-GSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111
>U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal protein
P1 homolog protein.
Length = 111
Score = 109 bits (261), Expect = 3e-24
Identities = 57/112 (50%), Positives = 69/112 (61%)
Frame = +2
Query: 122 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 301
M S ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EP WPGLFAKALEG++V++LI
Sbjct: 1 MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLI 60
Query: 302 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 457
T++ SG SDDDMGFGLFD
Sbjct: 61 TSVSSGA-GSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 30.3 bits (65), Expect = 2.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 557 PPPXPPXXPPXXXTAAADPP 616
PPP PP PP A+A PP
Sbjct: 5 PPPPPPPPPPPPPAASAPPP 24
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 557 PPPXPPXXPPXXXTAAADPP 616
PPP PP PP AA+ PP
Sbjct: 4 PPPPPPPPPPPPPPAASAPP 23
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 30.3 bits (65), Expect = 2.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 557 PPPXPPXXPPXXXTAAADPP 616
PPP PP PP A+A PP
Sbjct: 5 PPPPPPPPPPPPPAASAPPP 24
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 557 PPPXPPXXPPXXXTAAADPP 616
PPP PP PP AA+ PP
Sbjct: 4 PPPPPPPPPPPPPPAASAPP 23
>Z81030-5|CAB02709.1| 324|Caenorhabditis elegans Hypothetical
protein C01G10.7 protein.
Length = 324
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 110 SKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPY 247
S KM+ K + S ++ ++D VA+T + + + AAA+D PY
Sbjct: 34 SNQKMLDKVPMMQADSVVLELEDGVALTAKADARVRAAAALDKLPY 79
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 425 SDDDMGFGLFD 457
SDDDMGFGLFD
Sbjct: 302 SDDDMGFGLFD 312
>U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical
protein C37A2.7 protein.
Length = 107
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 425 SDDDMGFGLFD 457
SDDDMGFGLFD
Sbjct: 97 SDDDMGFGLFD 107
>U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical
protein B0432.7 protein.
Length = 621
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +2
Query: 146 CVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGS 316
C ++ L + DDD +T + + +L+ V PG+ A G NV + IGS
Sbjct: 269 CTFNVLTIGDDDCMMTRQIAADLLRRLVVSESSTTPGVPTLASTGKNVLNYGFFIGS 325
>AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical
protein Y62E10A.1 protein.
Length = 110
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 425 SDDDMGFGLFD 457
SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 23.8 bits (49), Expect(2) = 8.2
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = +2
Query: 560 PPXPPXXPPXXXTAAADPP 616
PP PP PP A PP
Sbjct: 794 PPPPPPLPPISSGAPPPPP 812
Score = 22.6 bits (46), Expect(2) = 8.2
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 557 PPPXPPXXPP 586
PPP PP PP
Sbjct: 765 PPPPPPPPPP 774
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 23.8 bits (49), Expect(2) = 8.3
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = +2
Query: 560 PPXPPXXPPXXXTAAADPP 616
PP PP PP A PP
Sbjct: 794 PPPPPPLPPISSGAPPPPP 812
Score = 22.6 bits (46), Expect(2) = 8.3
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 557 PPPXPPXXPP 586
PPP PP PP
Sbjct: 765 PPPPPPPPPP 774
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,603,792
Number of Sequences: 27780
Number of extensions: 316405
Number of successful extensions: 1551
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1434
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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