Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_G21
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi...    33   0.070
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    29   0.65 
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    29   0.65 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.6  

>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 32.7 bits (71), Expect = 0.070
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +3

Query: 588 CPGXVDNPQMCHVSHTAPCNRSSSGTIGLLCALFVHXPTGKVWLLGLQXKWNSG 749
           C G +D PQ C V +T+P + SS    G      V  P G+++ L  Q  +  G
Sbjct: 63  CSGSMDAPQPCAVLYTSP-SPSSISQAGPFAISQVFGPAGRLYFLWAQSTYAGG 115


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
 Frame = -1

Query: 283 NIPPKKLPKPSASIDTTLAVVTFM--IF-----NIYFDNRTRILYRSLDFVTVKLPP 134
           N+ P +L   S S   T+A+++F+  +F     N+Y  +   ++ RSLD +T+ +PP
Sbjct: 382 NLRPSQLYLDSMSFLKTMAILSFVSIVFIAIYLNLYNASFGHVVLRSLDVLTILVPP 438


>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +3

Query: 264 SFFGGMLPSCFSESARQRHPLVLSCLLCF----GGGVLLATSLVHMLPEAREK 410
           S  G  LP   S+  + R  + +  L  F    G GV+LAT+ +H+L  A  K
Sbjct: 74  SLIGMNLPLVLSKITKNRPNVYIEYLYLFARYFGSGVILATAFIHLLAPACNK 126


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 669  LLFLMNSYCTEPYDSRGTFEGYPXHRGIVLSILHRDSAKTISQFH 535
            +L ++ +Y  EPYD    F  Y  +R   L  L RDS+  ++  H
Sbjct: 1062 VLLIIGNYFNEPYDRASAFSLYMIYR---LETL-RDSSSALTLMH 1102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,532,600
Number of Sequences: 5004
Number of extensions: 73684
Number of successful extensions: 165
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)