Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_G20
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    35   0.018
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    31   0.17 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.29 
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    30   0.39 
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    29   0.89 
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   1.6  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    27   4.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.3  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    26   8.3  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 34.7 bits (76), Expect = 0.018
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +3

Query: 825 NPPPPPGXKXXXXXSXPXPPPPP 893
           NPPPPP        S P PPPPP
Sbjct: 8   NPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +2

Query: 812 PXXXKPPPPPRXKXXFXXFXPPSPAPPP 895
           P    PPPPP        F PPS  PPP
Sbjct: 6   PGNPPPPPPP------PGFEPPSQPPPP 27


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +2

Query: 176 PTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLS 337
           PT ET T  +    T   + +TTT+      + T +  T T P  + T+ LP++
Sbjct: 102 PTVETTTTPMVETTTITPMVETTTITPMVEAMITLMEETMTTPMEETTTILPMA 155



 Score = 29.1 bits (62), Expect = 0.89
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
 Frame = +2

Query: 152 TPLG*WKTPTQETATNLLTTARTSLILPKTTT----LMETATNLSTTVHITWTVPKADLT 319
           TP+    TPT ET T L T A T+ +   TTT     M T T ++TT  +  T+    + 
Sbjct: 249 TPMEAMITPTVET-TTLPTAAMTTPVEETTTTPMVETMITPTVVTTTTPMVETMITPTVV 307

Query: 320 SSLPL-SLVLAV 352
           ++ P+  LV+AV
Sbjct: 308 TTTPMVILVMAV 319



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +2

Query: 173 TPTQETATNLLTTARTSLILPK---TTTLMETATNLSTTVHITWTVPKADLTSSLPL 334
           TP +ET T +     T+ ILP    TT ++ET T    TV  T T P  + T+  P+
Sbjct: 68  TPMEETTT-ITPMVETTTILPMAAMTTPMVETTT--IPTVETT-TTPMVETTTITPM 120


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 828 PPPPPGXKXXXXXSXPXPPPPP 893
           PPPPP          P PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782



 Score = 29.9 bits (64), Expect = 0.51
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 828 PPPPPGXKXXXXXSXPXPPPPP 893
           PPPPP          P PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.5 bits (63), Expect = 0.67
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +2

Query: 812 PXXXKPPPPPRXKXXFXXFXPPSPAPPP 895
           P    PPPPP          PP P PPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 828 PPPPPGXKXXXXXSXPXPPPPP 893
           PPPPP          P P PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPP 754


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 378 NFLRYSLLPTASTRERGRLEVRSALGTVHVICTVVDRFV 262
           NF    ++P  STR+R  + +R   G +H+IC   D  +
Sbjct: 756 NFRVLDIIPFTSTRKRMSVIIRDEDGIIHLICKGADTVI 794


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +2

Query: 191 ATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSL 340
           A+ L +++ T+ + P  +T  ET ++ S+    T T+  +  TSS P+SL
Sbjct: 234 ASTLESSSLTNTVSPTESTFYETKSSTSSVP--TQTIDSSSFTSSTPVSL 281


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = +1

Query: 238 DYNPNG-NGYEPIDNGAYYVDRPQG---RPYFKPTPFPG 342
           DYN N  N Y PI N  Y+++   G    PYF     PG
Sbjct: 119 DYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNAPG 157


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 264  RTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 371
            R + ++C  R P  RP  +     PW + +  K I+
Sbjct: 1280 RDFIEQCFERDPEQRPRAVDLLTHPWITDFRKKTII 1315


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 5/27 (18%)
 Frame = +3

Query: 828 PPPPPGXKXXXXXSXPXPP-----PPP 893
           PPPPP  +     S P PP     PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPP 363


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 235 KDYNPNGNGYEPIDNGAYYVDRPQGRP 315
           K Y  +G G +P + G YY + P+G+P
Sbjct: 479 KIYCVHGVG-KPTERGYYYTNNPEGQP 504


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,212
Number of Sequences: 5004
Number of extensions: 56482
Number of successful extensions: 228
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)