Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_G19
         (859 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0678 + 27207340-27207447,27207555-27207668,27209111-272093...    46   4e-05
02_05_0144 + 26258841-26258948,26259099-26259212,26259335-262595...    46   4e-05
03_06_0282 - 32824950-32825135,32825247-32825505,32825651-328259...    45   9e-05
01_05_0337 + 21115388-21115961,21116471-21116597,21116683-211168...    33   0.29 
10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454           30   2.1  

>04_04_0678 +
           27207340-27207447,27207555-27207668,27209111-27209332,
           27209407-27209481,27209569-27209685,27210145-27210395,
           27210686-27210761,27210862-27210948,27211037-27211222
          Length = 411

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 19/50 (38%), Positives = 30/50 (60%)
 Frame = +2

Query: 524 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVXALS 673
           ++++  + +D G     +G+R QH   R P KGGIR+  +V  DEV AL+
Sbjct: 35  IKVECTIPKDDGTLASFIGFRVQHDNARGPMKGGIRYHPEVDPDEVNALA 84



 Score = 35.5 bits (78), Expect = 0.055
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +1

Query: 712 PFGGAXAGIKINPXEYSEHELEKITRRFT 798
           P+GGA  GI   P E S  ELE++TR FT
Sbjct: 97  PYGGAKGGIGCAPGELSTSELERLTRVFT 125


>02_05_0144 +
           26258841-26258948,26259099-26259212,26259335-26259556,
           26259660-26259734,26259827-26259943,26260046-26260296,
           26260833-26260908,26261045-26261131,26261216-26261401
          Length = 411

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 19/50 (38%), Positives = 30/50 (60%)
 Frame = +2

Query: 524 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVXALS 673
           ++++  + +D G     +G+R QH   R P KGGIR+  +V  DEV AL+
Sbjct: 35  IKVECTIPKDDGTLATFVGFRVQHDNSRGPMKGGIRYHPEVDPDEVNALA 84



 Score = 36.7 bits (81), Expect = 0.024
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +1

Query: 712 PFGGAXAGIKINPXEYSEHELEKITRRFT 798
           P+GGA  GI   P E S  ELE++TR FT
Sbjct: 97  PYGGAKGGIGCTPGELSRSELERLTRVFT 125


>03_06_0282 -
           32824950-32825135,32825247-32825505,32825651-32825901,
           32826309-32826425,32826613-32826687,32826788-32827009,
           32827396-32827509,32827694-32827801
          Length = 443

 Score = 44.8 bits (101), Expect = 9e-05
 Identities = 19/50 (38%), Positives = 30/50 (60%)
 Frame = +2

Query: 524 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVXALS 673
           ++++  + +D G     +G+R QH   R P KGGIR+  +V  DEV AL+
Sbjct: 35  IKVECTIPKDDGTLASYVGFRVQHDNARGPMKGGIRYHHEVDPDEVNALA 84



 Score = 34.7 bits (76), Expect = 0.096
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +1

Query: 712 PFGGAXAGIKINPXEYSEHELEKITRRFT 798
           P+GGA  GI  +P + S  ELE++TR FT
Sbjct: 97  PYGGAKGGIGCSPGDLSISELERLTRVFT 125


>01_05_0337 +
           21115388-21115961,21116471-21116597,21116683-21116884,
           21117460-21117546,21117622-21117681,21117800-21117886,
           21118451-21118522,21118675-21118730,21118812-21118897,
           21119427-21119517,21119593-21119750,21119827-21119918,
           21120110-21120190,21120282-21120479
          Length = 656

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +2

Query: 437 EDLKSRTPIEEKKKKVAGIL-KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTP 613
           E + S  P+  K  +   IL +L+EP +     + P   D G+  +  G+R Q S    P
Sbjct: 220 EVVHSLEPVLVKNSQHVQILERLLEP-ERCFIFRVPWVDDRGEAHVNRGFRVQFSQALGP 278

Query: 614 TKGGIRFSTDVT 649
            +GG+RF   +T
Sbjct: 279 CRGGLRFHPSMT 290


>10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454
          Length = 748

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 20/88 (22%), Positives = 37/88 (42%)
 Frame = +2

Query: 380 HMVEYFFHRACQVVEDKLVEDLKSRTPIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSG 559
           H     F +   V ED  + +   +  +E  K+KV     + E  + ++ ++   +   G
Sbjct: 642 HSGRAMFDKEIAVEEDIFILEEIGKLAMECLKEKVEERPDMKEVAERLVMLRRARKHGQG 701

Query: 560 DYEMILGYRAQHSTHRTPTKGGIRFSTD 643
            Y +   +  + S   TPT  G  FST+
Sbjct: 702 SYNLSPRHHEEISIETTPTSFGADFSTN 729


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,878,807
Number of Sequences: 37544
Number of extensions: 462833
Number of successful extensions: 987
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)