Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_G19
         (859 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)            102   3e-22
SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.042
SB_14929| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=6.4e-08)       36   0.042
SB_25509| Best HMM Match : PWP2 (HMM E-Value=4.4)                      35   0.074
SB_39930| Best HMM Match : Keratin_B2 (HMM E-Value=0.25)               34   0.17 
SB_43845| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)               32   0.52 
SB_29491| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)               32   0.52 
SB_47331| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_18156| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_17457| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.26)           29   3.7  
SB_50016| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  

>SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)
          Length = 520

 Score =  102 bits (245), Expect = 3e-22
 Identities = 49/112 (43%), Positives = 72/112 (64%), Gaps = 4/112 (3%)
 Frame = +2

Query: 350 IPTSANPKFFHMVEYFFHRACQVVEDKLVE--DLKSRTP--IEEKKKKVAGILKLMEPCD 517
           + +   P F  M   FF +A   VE +L+   D   + P   E+KK ++ GIL +M+PC 
Sbjct: 38  VESDTEPSFTEMCAGFFDQARTYVEHRLLTRPDPPGKIPEKFEDKKHRIKGILDVMKPCQ 97

Query: 518 HILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVXALS 673
            +L + FP++ D+G+Y+++ GYRAQHS HR+P KGGIR+S DV  DEV AL+
Sbjct: 98  DVLSVVFPIKLDNGEYKLVQGYRAQHSHHRSPCKGGIRYSEDVDIDEVQALA 149



 Score = 52.0 bits (119), Expect = 6e-07
 Identities = 26/40 (65%), Positives = 30/40 (75%)
 Frame = +1

Query: 712 PFGGAXAGIKINPXEYSEHELEKITRRFTP*NLXKKGFLG 831
           PFGGA  GIKI+P ++S  ELEKITRRFT   L KK F+G
Sbjct: 162 PFGGAKGGIKIDPSQHSVTELEKITRRFTV-ELAKKHFIG 200


>SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 997

 Score = 35.9 bits (79), Expect = 0.042
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +2

Query: 497 KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDV 646
           +++EP + +L  + P   D G+ ++  GYR + ++   P KGG+RF   V
Sbjct: 379 RIVEP-ERVLSFRVPWLDDKGEVQVNRGYRVEFNSSIGPYKGGLRFHPSV 427


>SB_14929| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=6.4e-08)
          Length = 131

 Score = 35.9 bits (79), Expect = 0.042
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +2

Query: 497 KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDV 646
           +++EP + +L  + P   D G+ ++  GYR + ++   P KGG+RF   V
Sbjct: 71  RIVEP-ERVLSFRVPWLDDKGEVQVNRGYRVEFNSSIGPYKGGLRFHPSV 119


>SB_25509| Best HMM Match : PWP2 (HMM E-Value=4.4)
          Length = 582

 Score = 35.1 bits (77), Expect = 0.074
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
 Frame = +2

Query: 311 TYASHEIPDKLKDIPTSANPKFFHMVEYFFHR--ACQVVEDKLVEDLKSRTPIEEKKKKV 484
           TY+  E+ D L++  +S     FH+  +  HR     +++ + V+D K +TP  E KK  
Sbjct: 334 TYSQSELMD-LRNNSSSLTD--FHI--FCLHRWLPANLLKPEAVKDAKKQTPDLEFKKWT 388

Query: 485 AGILKLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRT 610
            GIL        I E+  PL+R+  +      Y+AQ   H T
Sbjct: 389 KGILDHAGTVSAISEVIEPLKRNLTELFKAQDYQAQPLDHLT 430


>SB_39930| Best HMM Match : Keratin_B2 (HMM E-Value=0.25)
          Length = 312

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 242 SVQNEALNTMFRIIPAGVNVCCRTYASHEIPDKLKDIPTSA 364
           +V  +A+NT   ++   +N CCRT  +  I    K +PT A
Sbjct: 251 TVPTKAINTCKTVLTKAINTCCRTVPTKAINTCCKTVPTKA 291


>SB_43845| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)
          Length = 448

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +2

Query: 485 AGIL-KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDV 646
           A IL +++EP + ++  + P R DS +  +  G+R + ++   P KGG+RF   V
Sbjct: 47  ANILDRIVEP-ERVVIFRVPWRDDSNNIRVNRGFRVEFNSTIGPYKGGLRFHPTV 100


>SB_29491| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)
          Length = 486

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +2

Query: 485 AGIL-KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDV 646
           A IL +++EP + ++  + P R DS +  +  G+R + ++   P KGG+RF   V
Sbjct: 85  ANILDRIVEP-ERVVIFRVPWRDDSNNIRVNRGFRVEFNSTIGPYKGGLRFHPTV 138


>SB_47331| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -1

Query: 412 TGSVEKIFYHVEELRIRTCRNIFELIWNLMTSVCAAADIHSSWYDSEHCIEGF 254
           TG+V   +YH  +L I +  NI    W     VC   D   ++Y S++ I+ F
Sbjct: 203 TGAVYTDYYHDSDLTIGSVLNI----WGRKFQVCDCDDFTKAYYKSKYGIDSF 251


>SB_18156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 704

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
 Frame = +1

Query: 385 GRIFFPPSLSSCRRQAC*RFEVKDTH*RE-EKESSRYSKTYGTMRSHS*DSISSEARFWR 561
           GR F P S++   RQ   R+E      RE E E     K     +      +    +F R
Sbjct: 214 GRDFGPHSINVHERQCAKRWEANKKQQREIEDEKKAREKKREPWKEPVFPPLRRHEQFTR 273

Query: 562 LRNDIRLSRTTFHTQDSNQRRYSI 633
             +DIR  R + H +   +  YS+
Sbjct: 274 SLHDIRAKRDSLHLEFEKELLYSL 297


>SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 579

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = +1

Query: 343 QRYSYKCESEVLPHGRIFFPPSLSSC 420
           QR  YK  SE   HGR  FP SL  C
Sbjct: 163 QRVGYKVSSEAHIHGRQSFPLSLDHC 188


>SB_17457| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.26)
          Length = 889

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 650 WLRPLRIEYLLWLESCVWNVVRDSLISFRN--RQNRASEEIESQ 525
           WL  L I  LLW   CV+ ++RDS    ++       S EI+S+
Sbjct: 422 WLCLLTISLLLWQPLCVYTLLRDSHTMLKSPLASQLGSREIDSR 465


>SB_50016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2065

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 684  SSKXDNALTSSLVTSVENRIPPLVGVLCVECC 589
            ++K DN +TSS V   ++ + PLV  + V CC
Sbjct: 1994 AAKDDNEMTSSGVEHAQSLVNPLVIGIAVLCC 2025


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,896,617
Number of Sequences: 59808
Number of extensions: 517718
Number of successful extensions: 1075
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)