Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_G15
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.072
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    30   0.39 
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    29   0.89 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.89 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.072
 Identities = 19/58 (32%), Positives = 22/58 (37%)
 Frame = +3

Query: 705 KIPGPPXXSIXPPXXTPXXKTRXQXPXALXXXXPPVPGAPXVXXXXPPLKXXXPPPPP 878
           K P PP  ++  P   P        P  +    PP P  P V    PP     PPPPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAP-IPVPPPAPIMGGPPPPPPPPGVAGAGPP---PPPPPPP 783



 Score = 29.5 bits (63), Expect = 0.67
 Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
 Frame = +3

Query: 738 PPXXTPXXKTRXQXPXALXXXXP-PVPGAPXVXXXXPPLKXXXPPPPPXXP 887
           PP   P        P  +    P P+ G P      P +    PPPPP  P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 17/57 (29%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
 Frame = +3

Query: 708 IPGPPXXSIXP-PXXTPXXKTRXQXPXALXXXXPPVPGAPXVXXXXPPLKXXXPPPP 875
           IP P   S  P P   P   +    P          P AP +    PP+    PPPP
Sbjct: 149 IPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205


>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 47  LHSX*CTSSDQYSAACVLTSAFEFR*TYNEFRKDPILRLR 166
           LH+  C  SD+Y   C+   A+ +     +F KDP+  LR
Sbjct: 553 LHTLFCIESDRYGTTCM---AYRYDAANRQFIKDPMFDLR 589


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 16/53 (30%), Positives = 18/53 (33%)
 Frame = +2

Query: 719  PIXLXXATPXXPXXQNPXPXTXCPSXXXSPGSRXAGGXXGXPPPQXXXAPPPP 877
            P+      P  P      P    PS    P  + A G    PPP    APP P
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPS--EAPPVP 1201


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/60 (30%), Positives = 20/60 (33%)
 Frame = +3

Query: 708 IPGPPXXSIXPPXXTPXXKTRXQXPXALXXXXPPVPGAPXVXXXXPPLKXXXPPPPPXXP 887
           +P PP     PP   P        P +L    P  P  P      PPL    P  PP  P
Sbjct: 417 VPTPPSL---PPSAPPSLPP--SAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/47 (29%), Positives = 14/47 (29%)
 Frame = +3

Query: 738 PPXXTPXXKTRXQXPXALXXXXPPVPGAPXVXXXXPPLKXXXPPPPP 878
           PP   P           L    P  P  P      PPL    P PPP
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,548
Number of Sequences: 5004
Number of extensions: 39537
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)