Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_G13
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    29   0.67 
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    27   3.6  
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   4.7  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.3  

>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -2

Query: 242 PSDKVVNIARVSD*P*KLAGDRILLCVTRRHRNLSVHAXQGMQRDNNXLGIH 87
           P+DKVV +   +  P K A   +L C  R+ R+LSV   + ++RD+     H
Sbjct: 70  PADKVVEVVEKALGPHKSA---LLHCAIRQSRSLSVGNTRSLKRDSRGSSDH 118


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 309 TKKSLVALSQSPEDLPSPHLP 247
           T  S + LS SP + PSP+LP
Sbjct: 156 TSASRIGLSSSPTNTPSPNLP 176


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = +3

Query: 222 IHDFVTWDRANGGREG-LRD--FGRERP 296
           I   ++W+ ANG REG LRD   G+E P
Sbjct: 367 IQSLISWNEANGTREGFLRDPYSGKEFP 394


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 206 PTPSRYSRLCHLGQGKWGE 262
           P+P+   R  HL +GKW E
Sbjct: 308 PSPTSARRASHLSEGKWDE 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,619
Number of Sequences: 5004
Number of extensions: 44761
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)