Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_G13
         (891 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL354775-1|CAI12730.1|  276|Homo sapiens protein ( Human DNA seq...    33   1.8  

>AL354775-1|CAI12730.1|  276|Homo sapiens protein ( Human DNA
           sequence from clone RP11-223F20 on chromosome 13
           Contains a novel heterogeneous nuclear ribonucleoprotein
           family A protein and).
          Length = 276

 Score = 32.7 bits (71), Expect = 1.8
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +1

Query: 247 GQMGGGKVFGTLGESDQGLFGK--GGYNREFFNDDRGKLTGQAYGTXVLGPGGDSTXYGG 420
           G  GG   +G  G   +G +G+  GGYNR  F  D G   G    +   G GG  T YG 
Sbjct: 138 GNFGGRGGYGGGGGGSRGSYGRGDGGYNR--FGRDGGNYGGGPGYSSRGGYGGGGTGYGN 195

Query: 421 R 423
           +
Sbjct: 196 Q 196


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,196,801
Number of Sequences: 237096
Number of extensions: 1960513
Number of successful extensions: 4017
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3991
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11437206932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)