Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_G13
         (891 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084154-10|AAK29873.1| 1140|Caenorhabditis elegans Hypothetical...    34   0.12 
AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    30   1.9  
AC024859-14|AAY43989.1|  643|Caenorhabditis elegans Hypothetical...    30   2.6  

>AC084154-10|AAK29873.1| 1140|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.2 protein.
          Length = 1140

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 194 FKVSPTPSRYSRLCHLGQGKWGEGRSSGLWERATKDFLVK 313
           F  S T  R+ R+ HL Q  WG  +S GLW+ A    L++
Sbjct: 98  FWYSDTKDRFERITHLNQ--WGNTKSFGLWDSALDSKLIE 135


>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/58 (34%), Positives = 24/58 (41%)
 Frame = +1

Query: 247 GQMGGGKVFGTLGESDQGLFGKGGYNREFFNDDRGKLTGQAYGTXVLGPGGDSTXYGG 420
           G  GGG   G  G    G +G GG+         G + G  YG   +G GG    YGG
Sbjct: 164 GYGGGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGG----YGG 217


>AC024859-14|AAY43989.1|  643|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.19 protein.
          Length = 643

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 247 GQMGGGKVFGTLGESDQGLFGKGGY-NREFFNDDRGKLTGQAYGTXVLGPGGD 402
           G  GGG      G+     F +GGY NR+  +D+RG  +G++Y       GGD
Sbjct: 52  GGGGGGYNRQDRGDGGSSNFSRGGYNNRDEGSDNRG--SGRSYNNDRRDNGGD 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,176,560
Number of Sequences: 27780
Number of extensions: 279858
Number of successful extensions: 598
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)