Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_G12
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    64   2e-11
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    26   8.5  

>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 32/84 (38%), Positives = 50/84 (59%)
 Frame = +1

Query: 193 PIVLWHGMGDTCCMSFSLGSFKIFLEKNIPGVYVLSLQIGNNTVEDFENGYFMNPNLQVE 372
           P+V+WHG+GDT   SF+L      ++K   G  V ++++G+N  ED + GY      Q++
Sbjct: 27  PVVIWHGLGDTPT-SFTLTEVSQRVQKLTKGA-VYAIRVGDNEFEDIKAGYLGKLEDQLD 84

Query: 373 YVCEKLAADPKLSNGFNVMGFSQG 444
            VC+ +  +  LSNGF  +G SQG
Sbjct: 85  EVCDLIGNEDSLSNGFYALGLSQG 108


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 473 RCGHKLPQIKNMVSLGGQXQGHLWHTSLWC 562
           RCG    + +  +S GG    H+WH   +C
Sbjct: 21  RCGQAFQRRETPISFGG----HMWHKDCFC 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,118
Number of Sequences: 5004
Number of extensions: 53933
Number of successful extensions: 131
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)