Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_G12
(912 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50313-5|AAA92329.1| 270|Caenorhabditis elegans Palmitoyl prote... 100 1e-21
AY691522-1|AAU01161.1| 254|Caenorhabditis elegans palmitoyl pro... 100 1e-21
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 32 0.65
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 32 0.65
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 32 0.65
L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical pr... 29 6.1
L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family ... 28 8.1
>U50313-5|AAA92329.1| 270|Caenorhabditis elegans Palmitoyl protein
thioesteraseprotein 1 protein.
Length = 270
Score = 100 bits (240), Expect = 1e-21
Identities = 42/81 (51%), Positives = 56/81 (69%)
Frame = +1
Query: 202 LWHGMGDTCCMSFSLGSFKIFLEKNIPGVYVLSLQIGNNTVEDFENGYFMNPNLQVEYVC 381
+WHGMGD CC S+GS K E+ IPGVYV SLQ+G++ +D E+G++ N N V C
Sbjct: 1 MWHGMGDCCCNPLSMGSVKKLFEEQIPGVYVHSLQLGSSITKDIEHGFYANTNELVYMAC 60
Query: 382 EKLAADPKLSNGFNVMGFSQG 444
K+ DP+L NG+N +GFSQG
Sbjct: 61 IKIKNDPELKNGYNAIGFSQG 81
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/32 (56%), Positives = 24/32 (75%)
Frame = +2
Query: 440 RGCXFIRAVXQRCGHKLPQIKNMVSLGGQXQG 535
+G F+RAV QRC + P +KN+VS+GGQ QG
Sbjct: 80 QGAQFLRAVAQRCPN--PPMKNLVSVGGQHQG 109
>AY691522-1|AAU01161.1| 254|Caenorhabditis elegans palmitoyl
protein thioesterase protein.
Length = 254
Score = 100 bits (240), Expect = 1e-21
Identities = 42/81 (51%), Positives = 56/81 (69%)
Frame = +1
Query: 202 LWHGMGDTCCMSFSLGSFKIFLEKNIPGVYVLSLQIGNNTVEDFENGYFMNPNLQVEYVC 381
+WHGMGD CC S+GS K E+ IPGVYV SLQ+G++ +D E+G++ N N V C
Sbjct: 1 MWHGMGDCCCNPLSMGSVKKLFEEQIPGVYVHSLQLGSSITKDIEHGFYANTNELVYMAC 60
Query: 382 EKLAADPKLSNGFNVMGFSQG 444
K+ DP+L NG+N +GFSQG
Sbjct: 61 IKIKNDPELKNGYNAIGFSQG 81
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/32 (56%), Positives = 24/32 (75%)
Frame = +2
Query: 440 RGCXFIRAVXQRCGHKLPQIKNMVSLGGQXQG 535
+G F+RAV QRC + P +KN+VS+GGQ QG
Sbjct: 80 QGAQFLRAVAQRCPN--PPMKNLVSVGGQHQG 109
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 31.9 bits (69), Expect = 0.65
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = -2
Query: 911 GGXRXGRAGCXGRXXAGAXLGXXGGXG*GVXSXGXHXGGG 792
GG G GC G G G GG G G G GGG
Sbjct: 120 GGCGGGGGGCGGGCGGGGGGGCGGGGGGGCGGGGGGCGGG 159
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = -2
Query: 911 GGXRXGRAGCXGRXXAGAXLGXXGGXG*GVXSXGXHXGGGXXFG 780
GG G GC G G GG G G G GGG G
Sbjct: 63 GGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGCG 106
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 31.9 bits (69), Expect = 0.65
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = -2
Query: 911 GGXRXGRAGCXGRXXAGAXLGXXGGXG*GVXSXGXHXGGG 792
GG G GC G G G GG G G G GGG
Sbjct: 88 GGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGG 127
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/44 (40%), Positives = 18/44 (40%)
Frame = -2
Query: 911 GGXRXGRAGCXGRXXAGAXLGXXGGXG*GVXSXGXHXGGGXXFG 780
GG G GC G G G GG G G S G GGG G
Sbjct: 122 GGCGGGGGGCGGGGGGGCGGGSSGGCG-GGSSGGCGGGGGGGCG 164
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = -2
Query: 911 GGXRXGRAGCXGRXXAGAXLGXXGGXG*GVXSXGXHXGGG 792
GG G GC G G GG G G G GGG
Sbjct: 81 GGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGG 120
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 31.9 bits (69), Expect = 0.65
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = -2
Query: 911 GGXRXGRAGCXGRXXAGAXLGXXGGXG*GVXSXGXHXGGG 792
GG G GC G G G GG G G G GGG
Sbjct: 88 GGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGG 127
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/44 (40%), Positives = 18/44 (40%)
Frame = -2
Query: 911 GGXRXGRAGCXGRXXAGAXLGXXGGXG*GVXSXGXHXGGGXXFG 780
GG G GC G G G GG G G S G GGG G
Sbjct: 122 GGCGGGGGGCGGGGGGGCGGGSSGGCG-GGSSGGCGGGGGGGCG 164
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = -2
Query: 911 GGXRXGRAGCXGRXXAGAXLGXXGGXG*GVXSXGXHXGGG 792
GG G GC G G GG G G G GGG
Sbjct: 81 GGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGG 120
>L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical
protein F44E2.4 protein.
Length = 1283
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 41 DFAFSSPTAIVFSLNQLHQCTI*HINYK 124
DF+ +PTA S N+LH C I I K
Sbjct: 749 DFSRGAPTAACMSSNRLHSCAIPQIQGK 776
>L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family
protein 1, isoform b protein.
Length = 737
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/54 (33%), Positives = 18/54 (33%)
Frame = -1
Query: 912 GGGPXGAGXVXGAXGXGSRFGXXXGXXVRGXXXXXPXGGGXXFWXXXKGXXIRS 751
GGG G G G G FG G G GGG F G I S
Sbjct: 54 GGGGGGGGGGGGFGGGNGGFGGGGGGNYGGGGGNQGGGGGGGFNFNDIGGLINS 107
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,913,979
Number of Sequences: 27780
Number of extensions: 322464
Number of successful extensions: 777
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -