Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_G04
(860 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0441 + 17781533-17781775,17782007-17782114,17782386-177824... 34 0.17
05_04_0327 + 20298659-20298724,20300119-20300332,20300556-203006... 32 0.51
12_02_1167 + 26647293-26648356,26648493-26648577,26649129-266491... 29 4.8
09_01_0041 + 746494-746691,747301-747495,750509-750631,751457-75... 29 4.8
07_01_0346 - 2501825-2501908,2502143-2502244,2502623-2502646,250... 29 6.3
06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,558... 29 6.3
02_05_1183 + 34788219-34788533,34788733-34788930,34789010-347893... 29 6.3
01_06_0273 + 28073759-28074387,28074885-28075428,28076240-28076401 28 8.3
>11_04_0441 +
17781533-17781775,17782007-17782114,17782386-17782471,
17782546-17782807,17782921-17783120,17783770-17784012,
17784118-17784394,17784625-17784759,17784880-17784960,
17785311-17785406,17785661-17785756,17785834-17785890,
17785967-17786035,17786154-17786240,17786534-17786635,
17786730-17786819,17786900-17786980,17787573-17787653,
17787761-17787856,17787937-17787993,17788093-17788137,
17788218-17788346
Length = 906
Score = 33.9 bits (74), Expect = 0.17
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +2
Query: 164 NAKQSPVQIKERLRKNYRNKVQKCRGTLQDKFRELTFEKDNMCNVLKE---LYKEMIDFS 334
NA ++KE++R + G L D R+++ KDN ++ + L+ + ID
Sbjct: 676 NASSGYDRVKEQIRLHEAFDTHLASGALDDHVRQISSSKDNFVKIMLDDDTLHSQFIDLD 735
Query: 335 EDILEI 352
D+L++
Sbjct: 736 YDLLKL 741
>05_04_0327 +
20298659-20298724,20300119-20300332,20300556-20300632,
20301067-20301177,20301283-20301444
Length = 209
Score = 32.3 bits (70), Expect = 0.51
Identities = 16/84 (19%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Frame = +2
Query: 488 CPICQRDXFMSVNSCLKCPSCNVQI---KTSMQTSEVKEHIFKC-LDKHNSVCISDPQFT 655
CP+C++ ++ + C C +++ + + ++E + +D + C S P+F
Sbjct: 126 CPVCKQGELRETHNLVYCTMCKLRLDLGEDKINLEFLRERLANVHMDHLDRGCKSAPKFC 185
Query: 656 VIKDTSDCHIYLICETCNEMTYIL 727
+ +Y+ CE CN ++
Sbjct: 186 LQTMFELTALYIQCEECNTFDVVI 209
>12_02_1167 +
26647293-26648356,26648493-26648577,26649129-26649191,
26649381-26649443,26649987-26650070,26650229-26650783
Length = 637
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Frame = +2
Query: 152 NISSNAKQSPVQIKERLRKNYRN------KVQKCRGTLQDKFRELTFEKDNMCNVLKELY 313
++SSN Q +IK K+Y ++K G L+ + L + +N + EL
Sbjct: 359 HLSSNVSQVGKEIKSEAEKSYNTCQEKYACMEKANGNLEKQLLSLEEKYENATHANGELK 418
Query: 314 KEMIDFSEDILEIEDN 361
+E++ E + + +N
Sbjct: 419 EELLFLKEKFVSVVEN 434
>09_01_0041 +
746494-746691,747301-747495,750509-750631,751457-751636,
752772-753058,754343-754907
Length = 515
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 146 FKNISSNAKQSPVQIKERLRKNYRNKVQKCRGTLQDKFRELTFEKDNM 289
F IS A Q + ++E Y + CR +Q+K E+T + N+
Sbjct: 125 FNTISHKALQREITLQEE-NAAYEKAISNCRQKIQEKQMEVTLLRSNL 171
>07_01_0346 -
2501825-2501908,2502143-2502244,2502623-2502646,
2502693-2502819,2503122-2505109,2505804-2505821
Length = 780
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +2
Query: 233 CRGTLQDKFRELTFEKDNMCNVLKELYKEMI----DFSEDILEIEDNIL 367
C +LQD+ +E+ ++ N LK+ +KE + E++++I D +L
Sbjct: 210 CIKSLQDELERKLYEQSSIVNTLKKNWKETVVQCGAIHEELIDIADMLL 258
>06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,
5588428-5588484,5588663-5588800,5588901-5588966,
5589234-5589452,5589522-5589737,5589813-5589884,
5589952-5590205,5590356-5590525,5590840-5591029,
5592211-5592331,5592838-5592921,5593003-5593365,
5594530-5594724,5594938-5595933,5596329-5596370
Length = 1240
Score = 28.7 bits (61), Expect = 6.3
Identities = 27/102 (26%), Positives = 37/102 (36%), Gaps = 8/102 (7%)
Frame = +2
Query: 428 KTHMDDNI---DWSKIEQDNVIVCPICQRDXFMSVNSCLKCPSCNVQIKTSMQTSEVK-E 595
K D NI D +K + N + C IC R + +N C SC + S
Sbjct: 858 KVSADANIGSFDLAKFSKKNALPCDICMRSETV-LNRIFVCSSCKAAVHLDCYRSVTNPT 916
Query: 596 HIFKCLDKHNSVCISDPQFTVIKDTSDCH----IYLICETCN 709
+KC +C P V SDC L C+ C+
Sbjct: 917 GPWKC-----ELCQEMPSDVVAGSQSDCDGSKPCLLQCDLCH 953
>02_05_1183 +
34788219-34788533,34788733-34788930,34789010-34789359,
34789463-34789619
Length = 339
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 632 CISDPQFTVIKDTSDCHIYLICETCNEM 715
C SDP+F KD S H+Y +T EM
Sbjct: 155 CWSDPEFCRQKDVSLLHMYCYAKTMAEM 182
>01_06_0273 + 28073759-28074387,28074885-28075428,28076240-28076401
Length = 444
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 155 ISSNAKQSPVQIKERLRKNYRNKVQKCRGTLQDKFREL 268
I S+A + V ERL+ +N+ KC GTLQ++ L
Sbjct: 383 IYSSAAELEVLGMERLKLELQNRGLKCGGTLQERAARL 420
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,299,392
Number of Sequences: 37544
Number of extensions: 294474
Number of successful extensions: 812
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -