Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_G04
(860 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ... 33 0.35
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 30 1.8
U41995-7|AAP68946.1| 405|Caenorhabditis elegans Hypothetical pr... 30 2.4
U49449-1|AAB00117.1| 339|Caenorhabditis elegans olfactory recep... 29 3.2
U42830-6|AAC48279.2| 339|Caenorhabditis elegans Odorant respons... 29 3.2
Z69634-4|CAA93455.2| 674|Caenorhabditis elegans Hypothetical pr... 29 4.3
U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z72511-7|CAA96662.3| 269|Caenorhabditis elegans Hypothetical pr... 29 5.6
AC017117-1|AAF16618.1| 338|Caenorhabditis elegans Hypothetical ... 28 7.4
Z97190-2|CAM06586.1| 650|Caenorhabditis elegans Hypothetical pr... 28 9.8
Z75530-2|CAA99795.2| 351|Caenorhabditis elegans Hypothetical pr... 28 9.8
Z66564-7|CAA91472.2| 650|Caenorhabditis elegans Hypothetical pr... 28 9.8
Z47069-1|CAA87338.1| 964|Caenorhabditis elegans Hypothetical pr... 28 9.8
AY099352-1|AAM34494.1| 891|Caenorhabditis elegans gamma-tubulin... 28 9.8
AF040644-2|AAN63399.1| 963|Caenorhabditis elegans Gamma-tubulin... 28 9.8
AF040644-1|AAB94969.2| 891|Caenorhabditis elegans Gamma-tubulin... 28 9.8
AF039046-2|AAB94218.2| 516|Caenorhabditis elegans Hypothetical ... 28 9.8
>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
protein Y73F8A.5 protein.
Length = 1019
Score = 32.7 bits (71), Expect = 0.35
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 464 IEQDNVIVCPICQRDXFMSVNSCLKCP 544
+E++ + VC C++D F NSC +CP
Sbjct: 377 MEKNKLGVCEFCKKDYFSDGNSCSRCP 403
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical protein
F29G6.1 protein.
Length = 1170
Score = 30.3 bits (65), Expect = 1.8
Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 2/110 (1%)
Frame = +2
Query: 266 LTFEKDNMCNVLKELYKEMI-DFSEDILEIEDNILQEIKNXXXXXXXXXXXXXYQKTHMD 442
LT +K +CN +KE ++S NI+ E + K D
Sbjct: 854 LTIDKFEVCNEVKECNNACPKEYSPVCASNGQNIVNECELDKIRCLVENNVTTGDKLVKD 913
Query: 443 DNIDWSKIEQDNVIV-CPICQRDXFMSVNSCLKCPSCNVQIKTSMQTSEV 589
+ + +IE ++ V P+C + N CL + +Q+K + +T +V
Sbjct: 914 YDGECCRIENCDISVFSPVCDTEGVTHANMCLMDQNACIQMKKNKKTIQV 963
>U41995-7|AAP68946.1| 405|Caenorhabditis elegans Hypothetical
protein E02C12.8c protein.
Length = 405
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 278 KDNMCNVLKELYKEMIDFSEDILEIEDNILQEIKN 382
+++ + LKE+ +MI EDILEI DN L +
Sbjct: 367 EEDKVSALKEVKTKMIAMMEDILEIHDNNLNHFSD 401
>U49449-1|AAB00117.1| 339|Caenorhabditis elegans olfactory receptor
Odr-10 protein.
Length = 339
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 308 VPLIHYTYYPFQKLIREIYLAAFHGIFVPCFYSSCGASLLF 186
V I Y YY ++ +R IYL G FV F S ++F
Sbjct: 180 VSYIAYVYYQYENGVRHIYLKNLLGCFVHYFVMSMTFVVMF 220
>U42830-6|AAC48279.2| 339|Caenorhabditis elegans Odorant response
abnormal protein10 protein.
Length = 339
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 308 VPLIHYTYYPFQKLIREIYLAAFHGIFVPCFYSSCGASLLF 186
V I Y YY ++ +R IYL G FV F S ++F
Sbjct: 180 VSYIAYVYYQYENGVRHIYLKNLLGCFVHYFVMSMTFVVMF 220
>Z69634-4|CAA93455.2| 674|Caenorhabditis elegans Hypothetical
protein B0001.6 protein.
Length = 674
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +2
Query: 125 DKVSSPKFKNISSNAKQSPVQIKERLRKNYRNKVQKCRGTLQDKFRELTFEKDNMCNVLK 304
+K+ + K + + N ++ ++K+++ N Q + TLQ++ REL N + K
Sbjct: 588 EKMKNQKLEEAAFNDRKEKAELKKKV-SNLEQSAQNTQRTLQNQTRELNLYSTNRSWLRK 646
Query: 305 E 307
E
Sbjct: 647 E 647
>U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical protein
ZC53.4 protein.
Length = 1410
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 503 RDXFMSVNSCLKCPSCNVQIKT-SMQTSEVKEH 598
+D + N +CP C VQ T M+T++V++H
Sbjct: 963 QDEWTEFNKNQECPHCQVQYNTEDMKTTKVRDH 995
>Z72511-7|CAA96662.3| 269|Caenorhabditis elegans Hypothetical
protein F55A11.6a protein.
Length = 269
Score = 28.7 bits (61), Expect = 5.6
Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Frame = +2
Query: 119 SLDKVSSPKFKNISSNAKQSPVQIKERLRKNY-------RNKVQKCRGTLQDKFRELTFE 277
S+ SPKF SS+ + V + +KN+ +NK+ G L + F+
Sbjct: 10 SITYALSPKFVKSSSSGRHLSVSVSSTTQKNFPSPVQSRKNKMDTMHGFLVPTYTLHDFD 69
Query: 278 KDNMCNVLKELYK-EMIDFSEDILEIEDNILQE 373
C V++ +++ + + + +D IL++
Sbjct: 70 DGEECKVVRMIFQMSRVPYEFKHVHRDDYILED 102
>AC017117-1|AAF16618.1| 338|Caenorhabditis elegans Hypothetical
protein F43C11.8 protein.
Length = 338
Score = 28.3 bits (60), Expect = 7.4
Identities = 20/84 (23%), Positives = 36/84 (42%)
Frame = +2
Query: 461 KIEQDNVIVCPICQRDXFMSVNSCLKCPSCNVQIKTSMQTSEVKEHIFKCLDKHNSVCIS 640
K+ Q+++I+CP C+ +S L+ +Q +T ++ K S +
Sbjct: 53 KLLQNSMILCPFCREATNVSTVKDLQKNFALLQAVEHAKTRTEEKDPIDSPPKCASHQYN 112
Query: 641 DPQFTVIKDTSDCHIYLICETCNE 712
+F I+ T L+C TC E
Sbjct: 113 FAEFVCIEPTCSSSDKLMCRTCEE 136
>Z97190-2|CAM06586.1| 650|Caenorhabditis elegans Hypothetical
protein F52D10.6 protein.
Length = 650
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/66 (22%), Positives = 31/66 (46%)
Frame = +2
Query: 185 QIKERLRKNYRNKVQKCRGTLQDKFRELTFEKDNMCNVLKELYKEMIDFSEDILEIEDNI 364
+I+ L + N C ++ + + NVLKE Y + + +S+D+ I ++
Sbjct: 129 EIEMSLENDVDNYPPSCSSEYYITRKDFGKPEPQLANVLKEFYWKELVYSKDMRLINESF 188
Query: 365 LQEIKN 382
+IK+
Sbjct: 189 FNKIKD 194
>Z75530-2|CAA99795.2| 351|Caenorhabditis elegans Hypothetical
protein C47E8.4 protein.
Length = 351
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/54 (24%), Positives = 30/54 (55%)
Frame = +2
Query: 98 HFIFKMCSLDKVSSPKFKNISSNAKQSPVQIKERLRKNYRNKVQKCRGTLQDKF 259
+FIF + + + + +++ ++ I+++LRK +K +KCR + +KF
Sbjct: 18 YFIFAVNKMSRADEGRLIHLAKKREREKEDIEQQLRKLEEDK-EKCRVGITNKF 70
>Z66564-7|CAA91472.2| 650|Caenorhabditis elegans Hypothetical
protein F52D10.6 protein.
Length = 650
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/66 (22%), Positives = 31/66 (46%)
Frame = +2
Query: 185 QIKERLRKNYRNKVQKCRGTLQDKFRELTFEKDNMCNVLKELYKEMIDFSEDILEIEDNI 364
+I+ L + N C ++ + + NVLKE Y + + +S+D+ I ++
Sbjct: 129 EIEMSLENDVDNYPPSCSSEYYITRKDFGKPEPQLANVLKEFYWKELVYSKDMRLINESF 188
Query: 365 LQEIKN 382
+IK+
Sbjct: 189 FNKIKD 194
>Z47069-1|CAA87338.1| 964|Caenorhabditis elegans Hypothetical
protein F36G3.1 protein.
Length = 964
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/82 (20%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Frame = +2
Query: 149 KNISSNAKQSPVQIKERLRKNYRNKVQKCRGT---LQDKFRELTFEKDNMCNVLKELYKE 319
+ + S K+ +QI +L++ Q G + ++ ELT E D +C +++ +E
Sbjct: 673 EKVKSGEKEL-LQINSKLKEELEESQQTIDGIEIEAEQQYTELTSEIDELCEIVQRKDQE 731
Query: 320 MIDFSE---DILEIEDNILQEI 376
+ E +++ IE+++ ++
Sbjct: 732 LAILKEKVTNVINIENSLKDDV 753
>AY099352-1|AAM34494.1| 891|Caenorhabditis elegans gamma-tubulin
ring protein GRIP-1 protein.
Length = 891
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 548 CNVQIKTSMQTSEVKEHIFKCLDKHNSVCISDPQFT 655
C + ++ M+T +KEH+ K + +SDP+FT
Sbjct: 558 CGIVMRMVMETGRLKEHVLK---STSFFFLSDPRFT 590
>AF040644-2|AAN63399.1| 963|Caenorhabditis elegans Gamma-tubulin
interacting proteinprotein 1, isoform b protein.
Length = 963
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 548 CNVQIKTSMQTSEVKEHIFKCLDKHNSVCISDPQFT 655
C + ++ M+T +KEH+ K + +SDP+FT
Sbjct: 558 CGIVMRMVMETGRLKEHVLK---STSFFFLSDPRFT 590
>AF040644-1|AAB94969.2| 891|Caenorhabditis elegans Gamma-tubulin
interacting proteinprotein 1, isoform a protein.
Length = 891
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 548 CNVQIKTSMQTSEVKEHIFKCLDKHNSVCISDPQFT 655
C + ++ M+T +KEH+ K + +SDP+FT
Sbjct: 558 CGIVMRMVMETGRLKEHVLK---STSFFFLSDPRFT 590
>AF039046-2|AAB94218.2| 516|Caenorhabditis elegans Hypothetical
protein R09B5.11 protein.
Length = 516
Score = 27.9 bits (59), Expect = 9.8
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -2
Query: 511 VVSLTNWTNNYIILLNF*PVNVVVH 437
V + +NW N+++ L F P+N ++H
Sbjct: 446 VSATSNWVANWMVGLTFLPINNIIH 470
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,636,000
Number of Sequences: 27780
Number of extensions: 316912
Number of successful extensions: 1024
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -