Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_G04
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    23   4.8  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    23   4.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.8  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    23   4.8  

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 627 ELCLSKHLKICSLTSDVCIDVFI*TLQLGHFKQELTD 517
           EL   KH   C  T D+C DV    +  G  K  LT+
Sbjct: 48  ELGRFKHTDACCRTHDMCPDV----MSAGESKHGLTN 80


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 627 ELCLSKHLKICSLTSDVCIDVFI*TLQLGHFKQELTD 517
           EL   KH   C  T D+C DV    +  G  K  LT+
Sbjct: 53  ELGRFKHTDACCRTHDMCPDV----MSAGESKHGLTN 85


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 239 GTLQDKFRELTFEKDNMCNVLKEL 310
           GT+ +KFR+L   +DN+  +  +L
Sbjct: 609 GTISEKFRKLIRIEDNVATLRMKL 632


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 627 ELCLSKHLKICSLTSDVCIDVFI*TLQLGHFKQELTD 517
           EL   KH   C  T D+C DV    +  G  K  LT+
Sbjct: 53  ELGRFKHTDACCRTHDMCPDV----MSAGESKHGLTN 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,231
Number of Sequences: 438
Number of extensions: 3818
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)