Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_G02
         (903 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    51   5e-05
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    50   6e-05
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    45   0.002
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.087
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    40   0.11 
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    38   0.27 
UniRef50_Q53PL2 Cluster: Hydroxyproline-rich glycoprotein DZ-HRG...    36   1.4  
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    35   2.5  
UniRef50_Q1ZHA2 Cluster: Putative uncharacterized protein; n=1; ...    35   3.3  
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ...    34   5.7  

>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 50.8 bits (116), Expect = 5e-05
 Identities = 29/57 (50%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +1

Query: 289 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGXRYQL-TQRR*YGYPXNXXITQ 456
           CI + A AR EAV VL ALPL RS TRC RS GCG      +  R YG P    + Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 50.4 bits (115), Expect = 6e-05
 Identities = 22/33 (66%), Positives = 25/33 (75%)
 Frame = +1

Query: 313 RGEAVCVLGALPLPRSLTRCARSFGCGXRYQLT 411
           R   +C  G +PLPRSLTR ARSFGCG RY+LT
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +1

Query: 91  DPDMIRYIDEFGQTTTRMQ 147
           DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.9 bits (89), Expect = 0.087
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -2

Query: 359 ERGSGRAPNTQTASPRALADSLMQ 288
           +R +  APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 39.5 bits (88), Expect = 0.11
 Identities = 21/41 (51%), Positives = 25/41 (60%)
 Frame = +2

Query: 215 INKLTTTIAFILCFRFRXEVWEVFSALMNXPTRGERRFAYW 337
           +++LT      L  RF      V +ALMN PTRGERRFAYW
Sbjct: 1   MSELTHINCVALTARFPVGKPVVPAALMNRPTRGERRFAYW 41


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 38.3 bits (85), Expect = 0.27
 Identities = 18/21 (85%), Positives = 18/21 (85%)
 Frame = +3

Query: 405 AHSKAVIRLSXXSXDNAGKNM 467
           AHSKAVIRLS  S DNAGKNM
Sbjct: 39  AHSKAVIRLSTESGDNAGKNM 59


>UniRef50_Q53PL2 Cluster: Hydroxyproline-rich glycoprotein
           DZ-HRGP-related; n=5; Oryza sativa|Rep:
           Hydroxyproline-rich glycoprotein DZ-HRGP-related - Oryza
           sativa subsp. japonica (Rice)
          Length = 316

 Score = 35.9 bits (79), Expect = 1.4
 Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
 Frame = +3

Query: 567 STPHVTGGXNPTXLXXXPRRFPPGKLPSXRSPWFPNPXXLYRHTCSAXPPLPXXR-GXLS 743
           ++PH  GG NP        ++PP  LP    P  P P   + H  +  PPLP        
Sbjct: 159 ASPHHGGGENPAWPRPGNNQWPP--LPPFNQP--PTPE--WPHPGNKWPPLPPFHPPPTP 212

Query: 744 HYPHPGXSL--QLPXXXXAXPPXP 809
            +PHPG +    LP      PP P
Sbjct: 213 AWPHPGGNKWPPLPPFPSHPPPTP 236


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 35.1 bits (77), Expect = 2.5
 Identities = 23/47 (48%), Positives = 24/47 (51%)
 Frame = -1

Query: 543 GAEXXEKRQQRGXFTVXXXXXXXXLTCSFLRYXXIXXITVLPPLSEL 403
           GAE  EKR +     V         TCSF  Y  I  ITVLPPLSEL
Sbjct: 5   GAEPMEKRLRCWLLPVLCFLL----TCSFRLYPLILWITVLPPLSEL 47


>UniRef50_Q1ZHA2 Cluster: Putative uncharacterized protein; n=1;
           Psychromonas sp. CNPT3|Rep: Putative uncharacterized
           protein - Psychromonas sp. CNPT3
          Length = 237

 Score = 34.7 bits (76), Expect = 3.3
 Identities = 16/43 (37%), Positives = 17/43 (39%)
 Frame = +3

Query: 630 PPGKLPSXRSPWFPNPXXLYRHTCSAXPPLPXXRGXLSHYPHP 758
           PPG  P    P +P P   Y H   A PP P       HY  P
Sbjct: 38  PPGYYPYPGCPPYPAPNPYYMHPGHAYPPPPHMHHGQPHYEQP 80


>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
           Methanocorpusculum labreanum Z|Rep: Putative
           uncharacterized protein - Methanocorpusculum labreanum
           (strain ATCC 43576 / DSM 4855 / Z)
          Length = 109

 Score = 33.9 bits (74), Expect = 5.7
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -1

Query: 249 KMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 85
           +MNA V +  FIAA      +  +T +   AFF L S  G    ++VSY VW  L
Sbjct: 27  RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 651,664,135
Number of Sequences: 1657284
Number of extensions: 10380469
Number of successful extensions: 18561
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18539
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81981722200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)