Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_F24
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    31   0.17 
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.90 
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    28   2.1  
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    27   4.8  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    27   4.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.3  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   8.4  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +2

Query: 131 AGVVELSADSMSPSNQDLEDKLYNSILTGDYDSAVRKSLE 250
           A +V+ S    +P + DLE  +  ++LTGD  SAV+  LE
Sbjct: 537 AEIVKDSFKIFNPEDSDLEKNITEALLTGDVLSAVKACLE 576


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -2

Query: 250 FQALTYSTVVVTGEDAVVQFVLEVLV 173
           F  +T   V+V  EDAVV+FVL +LV
Sbjct: 181 FLGVTVQYVMVLPEDAVVEFVLTILV 206


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 8/38 (21%), Positives = 22/38 (57%)
 Frame = +3

Query: 273 SIVQNVVNNLIIDKRRNTMEYCYKLWVGNGQDIVKKYF 386
           +I+   V+N I+D+  +  ++C ++W G     ++ ++
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFY 284


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +2

Query: 116 VLAASAGVVELSADSMSPSNQDLEDKLYNSILTGDYDSAVRKSLEYESQGQG 271
           V+ A+AG+  +   S+   N+D+  K+    L G Y +A      ++ QG+G
Sbjct: 91  VMIANAGIA-IPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKG 141


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 276 IVQNVVNNLIIDKRRNTMEYCYKLWVGNGQDIVK 377
           +++++  NL I    N +EY   LW  NG  I K
Sbjct: 447 VLKDIFFNLQIGVTFNILEYLRHLWSNNGDAIAK 480


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 120 SPPAPASWNYPRTA*ALLTKTSRTNCTTASS 212
           +PP PAS +   T+ + L  TS T+CTT++S
Sbjct: 315 TPPPPASTSSTGTSSSPLPSTS-TSCTTSTS 344



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 120 SPPAPASWNYPRTA*ALLTKTSRTNCTTASS 212
           +PP PAS +   T+ + L  TS T+CTT++S
Sbjct: 369 TPPPPASTSSTGTSSSPLLSTS-TSCTTSTS 398


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
 Frame = -1

Query: 389 WEVLFDNILS--VADPQL---VAVLHGVPSLVNDQIVNYI 285
           W+VLF + L+  ++ P     V  LHGV + VN  + +YI
Sbjct: 188 WDVLFHDYLNETLSQPAFSFNVPDLHGVDNKVNQYVFDYI 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,168,785
Number of Sequences: 5004
Number of extensions: 57829
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)