Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_F24
         (896 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0417 - 21961780-21962157                                         31   1.2  
06_03_0179 - 17604561-17606435                                         30   2.2  
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342...    30   2.9  
10_07_0057 + 12460986-12461036,12461108-12461161,12461420-124614...    29   6.6  
06_03_0426 + 20667639-20667938                                         29   6.6  
07_03_0906 + 22481456-22481802,22482105-22482186,22482299-224824...    28   8.8  

>01_05_0417 - 21961780-21962157
          Length = 125

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -3

Query: 531 TEPPSCVLCRTQGHPANYRGCPRA 460
           T PP C  C  QG P+   GCP A
Sbjct: 5   TPPPPCAACAHQGRPSCPAGCPLA 28


>06_03_0179 - 17604561-17606435
          Length = 624

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
 Frame = +3

Query: 123 PPAPASWNYPRTA*ALLTKTSRTNCTTASSPVT----TTVLYVRAWNTRAKARXSIVQNV 290
           P   AS   P+T   L   TS  + ++++SP +      VLY RAW    +++  ++ N 
Sbjct: 312 PHPSASSPEPKTTEELAAVTSSKSSSSSTSPCSRIHEVVVLYKRAWKVVYRSKQLLLTNF 371

Query: 291 VNNLII 308
           + ++++
Sbjct: 372 LESVVV 377


>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
            26834330-26834732,26834840-26835118,26835285-26835716,
            26836362-26836838,26837171-26837212,26837285-26837545,
            26837637-26838938,26839146-26839575,26839643-26840046,
            26840360-26840716,26840842-26841102,26841494-26842141,
            26842231-26842452,26842547-26842768,26842860-26843009,
            26843739-26844111,26844467-26844689,26845167-26845425,
            26845585-26845920,26846013-26846999,26848395-26849624,
            26849706-26849768,26849858-26849910,26849998-26850079,
            26850520-26850588,26851070-26851129,26851205-26851267,
            26851993-26852101,26852742-26852827,26853120-26853847,
            26854613-26854676
          Length = 3716

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -2

Query: 199  VQFVLEVLVRRAHAVRG*FHDAGAGGEHAHCEHNEKFHFVRSLFRSLSRLQIKS*GIPYS 20
            +++  ++LV   H++    H       HA   ++ + HFV  +  SLSRL     G+PY+
Sbjct: 1836 IRYTKKILVEEGHSIPNMIHIFQLIVRHADLFYSCRAHFVPQMVNSLSRL-----GLPYN 1890


>10_07_0057 +
           12460986-12461036,12461108-12461161,12461420-12461482,
           12461666-12461716,12461996-12462057,12462156-12462318,
           12462829-12462939,12463029-12463166,12463248-12463322,
           12463420-12463540,12464827-12464981,12465080-12465154,
           12465270-12465473,12465670-12465786
          Length = 479

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -2

Query: 409 MMSLKLNGKYFLTISCPLPTHSL*QYSMVFRLLSMI 302
           MM L + GK    I CP+P+HSL   SMV R  +++
Sbjct: 152 MMHLLIRGKKD-GILCPIPSHSLYTDSMVLRGATLV 186


>06_03_0426 + 20667639-20667938
          Length = 99

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -3

Query: 165 LMLSADSSTTPALAASTHIANTTRSFILLGAFSDRSQDCKSN 40
           L+ S   S + A+AAS+ +   +R   LL  + DR Q C+SN
Sbjct: 54  LLWSLKVSRSYAMAASSAVLKVSRVVKLLRWWQDREQLCRSN 95


>07_03_0906 +
           22481456-22481802,22482105-22482186,22482299-22482400,
           22483005-22483315,22483948-22484044,22484522-22484696,
           22485074-22485150,22485632-22486027,22486254-22486303,
           22487315-22487382,22488142-22488701
          Length = 754

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
 Frame = -1

Query: 287 ILNDAXPGLGSRIPSSYVQHCRSHR*GCCCTVC---PRGLG*K 168
           + N A  G G  +PS        HR GC C VC   P G G K
Sbjct: 592 LANLAILGEGESLPSQPTTRHPRHRPGCSCIVCIQPPSGKGPK 634


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,291,080
Number of Sequences: 37544
Number of extensions: 468995
Number of successful extensions: 1232
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)