Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_F24
         (896 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U82968-1|AAB40927.1|  281|Caenorhabditis elegans MAD-like-1 homo...    31   1.5  
U40947-2|AAC48067.1|  281|Caenorhabditis elegans Mad-like protei...    31   1.5  
AC006834-6|AAF40004.1|  233|Caenorhabditis elegans Hypothetical ...    29   4.5  

>U82968-1|AAB40927.1|  281|Caenorhabditis elegans MAD-like-1 homolog
           protein.
          Length = 281

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 42  LICS-LESDRKRLLTK*NFSLCSQCACS-PPAPASWNYPRTA*ALLTKTSRTN 194
           L C  L+ D+K+     N S  SQ  CS PPA  S  + RTA   L KT R N
Sbjct: 58  LFCGKLKVDKKQSSCASNASTSSQPYCSSPPARKSSKHSRTAHNELEKTRRAN 110


>U40947-2|AAC48067.1|  281|Caenorhabditis elegans Mad-like protein 1
           protein.
          Length = 281

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 42  LICS-LESDRKRLLTK*NFSLCSQCACS-PPAPASWNYPRTA*ALLTKTSRTN 194
           L C  L+ D+K+     N S  SQ  CS PPA  S  + RTA   L KT R N
Sbjct: 58  LFCGKLKVDKKQSSCASNASTSSQPYCSSPPARKSSKHSRTAHNELEKTRRAN 110


>AC006834-6|AAF40004.1|  233|Caenorhabditis elegans Hypothetical
           protein ZK973.9 protein.
          Length = 233

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 431 HLQKLQPR-SEARGHPR*FAG*PCVRHRTQL 520
           HLQ+ QP+ S  +GHP    G P   HR Q+
Sbjct: 93  HLQQQQPQHSPQQGHPHPQQGLPAAHHRQQM 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,490,589
Number of Sequences: 27780
Number of extensions: 371178
Number of successful extensions: 879
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)