Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_F23
         (870 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr...    32   0.61 
AF047663-7|AAC04448.1|  178|Caenorhabditis elegans Hypothetical ...    30   2.5  
M77697-7|AAA27902.6|  903|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical p...    29   5.7  
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AC006708-22|AAF60420.2|  335|Caenorhabditis elegans Hypothetical...    28   10.0 

>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
            F45E4.4 protein.
          Length = 2361

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -2

Query: 428  WNKLTLPATPSCSPKPGMRVPVRLSPCPFTLSRAS 324
            W K T   TPS S KP +  P R  P P   S+ S
Sbjct: 1980 WAKTTTSQTPSTSTKPTVTAPKRSDPIPIAPSQRS 2014


>AF047663-7|AAC04448.1|  178|Caenorhabditis elegans Hypothetical
           protein W09G12.6 protein.
          Length = 178

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
 Frame = -1

Query: 384 AGNAGPGQA-QPVPVYVVQSEPCGGSAELVAVVEVGGPDGAEHVLVVAGERDLQGGPGGS 208
           A +AG  QA  P     + S   G SA   A    GG  GA+   ++ G   L    GG 
Sbjct: 58  AASAGSSQAASPAGASAIGSSQAGSSAGSPAAAAAGGSGGADAGAILNGVGGLMRSVGGL 117

Query: 207 VRVHCEAAG 181
                 AAG
Sbjct: 118 AGAAGGAAG 126


>M77697-7|AAA27902.6|  903|Caenorhabditis elegans Hypothetical
           protein B0303.11 protein.
          Length = 903

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 657 STPAXEVDTPFLQIFXGAPCGILLLEI 737
           S P  E+ T F Q+F  A CG+ +L I
Sbjct: 207 SPPNEEISTIFAQLFPAAMCGLTILNI 233


>Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical
           protein Y49E10.29 protein.
          Length = 559

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -2

Query: 389 PKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRGTFRAAPEV 210
           P P    PV+ +P   T S A PA+ A  + +   SA P + S  +  P   T +A+ + 
Sbjct: 402 PAPQQAPPVQQNPPKPTPSPAPPAQKAQPVTQQQASAPPTSPSAPVQAPNTPTQKASSQD 461

Query: 209 P 207
           P
Sbjct: 462 P 462


>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical protein
            F35A5.1 protein.
          Length = 1274

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -2

Query: 449  LRSWLLLWNKLTLPATPSCSPKPGMRVPVRLSPCPFTLSRASPAEAA 309
            ++ W   W     PA P  +P+P  + PV     P      SP +AA
Sbjct: 983  VKKWKPPWEDDDEPAEPVSAPEPEKKTPVLAKKAPAKPRDPSPKKAA 1029


>AC006708-22|AAF60420.2|  335|Caenorhabditis elegans Hypothetical
           protein Y110A7A.2 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 597 MTTRPAVS*XCSDLRPVRSTSTPAXEVDTPFL 692
           +T RP +      ++P++S S P   +D+PF+
Sbjct: 14  ITPRPIMVQPMGGMKPIKSASNPPTPLDSPFM 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,056,536
Number of Sequences: 27780
Number of extensions: 303741
Number of successful extensions: 855
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)