Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_F21
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    31   0.22 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.8  

>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 608 IKXPGVSPLEAPSCALPVPTLPLTGIPVPPFLPFRXSVAPFLIASPL 748
           +  P + P   P+   P PT  +   P PP  P R S++P +  +PL
Sbjct: 718 VNSPAIKPQVTPAPPTPAPTPAVKHHPPPP--PVRSSISPSMPPAPL 762


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +2

Query: 620  GVSPLEAPSCALPVPTLPLTGIPVPP 697
            GV P+  PS A PVPT P  G+P  P
Sbjct: 1206 GVPPVPPPSTAPPVPT-PSAGLPPVP 1230



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +2

Query: 578  KSEVAKPDRTIKXPGVSPLEAPSCALPVPTLPLTGIPVP 694
            K  VA P        V P+ APS A PVP   +   PVP
Sbjct: 1096 KPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVP 1134



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 620  GVSPLEAPSCALPVPTLPLTGI-PVPP 697
            GV P+  PS A PVP  P  G+ PVPP
Sbjct: 1187 GVPPVPPPSEAPPVPK-PSVGVPPVPP 1212


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
 Frame = +2

Query: 596  PDRTIKXPGVSPLEA--PSCALPVPTLPLTGIPVPPFLPFRXSVAPFLIASPL 748
            P   +  P V P  A  P  + P P  P   +P PP  P   +  P     PL
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPL 1735


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,988,161
Number of Sequences: 5004
Number of extensions: 55142
Number of successful extensions: 177
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)