Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_F21
(904 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0313 + 22240971-22242176 32 0.54
02_05_0868 + 32342967-32343915,32344389-32344447 32 0.72
03_01_0605 - 4453409-4453692,4454541-4454594,4454706-4454812,445... 30 2.9
09_06_0081 + 20745627-20748144,20748211-20748308 29 3.8
03_06_0758 - 36052261-36052301,36052463-36052697,36052895-360529... 29 3.8
11_06_0196 + 21144094-21144483 29 5.1
04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476 29 5.1
12_02_0299 - 17051570-17052474,17053542-17053755 29 6.7
07_01_0466 - 3518315-3521428 29 6.7
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.8
09_02_0082 - 4060018-4061604 28 8.8
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 28 8.8
>09_06_0313 + 22240971-22242176
Length = 401
Score = 32.3 bits (70), Expect = 0.54
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 631 PGSSLVRSPCSDP---AAYRDTCPALSPLPRXRGPLSHSLTP 747
P S+ VR PC+ P A + TC A+ +PR G + S+ P
Sbjct: 13 PRSTAVRPPCATPFSRAHWHATCAAIRRVPRVNGDSNSSIKP 54
>02_05_0868 + 32342967-32343915,32344389-32344447
Length = 335
Score = 31.9 bits (69), Expect = 0.72
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = +2
Query: 545 PPXRASQKSTLKSEVAKPDRTIKXPGVSPLEAPSCALPVPTLPLTGIPVPPFLPFRXSVA 724
PP A ++ + A P R + PG +P APS P P P +P PP + R S
Sbjct: 89 PPVAAPGRAFRQPAPAVPGRAFRQPGPAP--APS---PAPAPPRRRMPSPPPVARRPSTP 143
Query: 725 P 727
P
Sbjct: 144 P 144
>03_01_0605 -
4453409-4453692,4454541-4454594,4454706-4454812,
4454865-4454928,4456996-4457896
Length = 469
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +2
Query: 587 VAKPDRTIKXPGVSPLEAPSCALPVPTLPLTGIPVPPFLPFRXSVAPFLIA 739
VA+PD + VS S +LP G+ P L F S P L+A
Sbjct: 121 VARPDAELLSCVVSCCRRASASLPARAAHAYGVKTAPLLAFYASAGPALVA 171
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +2
Query: 602 RTIKXPGVSPLEAPSCALPVPTLPLTGIPVPPFLPFRXSVAPFLIASP 745
RT+ P +P AP+ +P+P P +P PP V P SP
Sbjct: 345 RTLAPPAPTP-PAPATPVPMPPTPTRLVPTPPAPGPPADVPPRFTVSP 391
>03_06_0758 -
36052261-36052301,36052463-36052697,36052895-36052966,
36056477-36056567,36056650-36056872,36056964-36057300,
36057406-36057588
Length = 393
Score = 29.5 bits (63), Expect = 3.8
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Frame = +2
Query: 623 VSPLEAPSCALPVPTLPLTGIPVPPFL--PFRXSVAPFL----IASPLVXYSQLRWXGXP 784
+ P + A P P P + PPFL P R AP L +ASP+ S + + G P
Sbjct: 132 IGPYVRGATAPPPPPPPPMAVAPPPFLPPPLRPFAAPLLFHHDMASPVSPVSPIYYVGPP 191
>11_06_0196 + 21144094-21144483
Length = 129
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 572 TLKSEVAKPDRTIKXPGVSPLEAPSCALPVPTLPLTGIPVPPFLPFRXSVAP 727
T KS VAKP + V+ ++ P+ A+ P P P P +P S++P
Sbjct: 69 TTKSAVAKPPAVAEPLAVAVIKPPAAAVAKPPWPQPRSP-SPSMPRSPSLSP 119
>04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476
Length = 676
Score = 29.1 bits (62), Expect = 5.1
Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 11/107 (10%)
Frame = +2
Query: 410 LTQRR*YGYPQNQGDNAGKNM*AKGQQKAXNRKKAASLAFFHRLRPPXRA----SQKSTL 577
LT+R + D + + KG+ K AAS++ RPP RA + ST
Sbjct: 398 LTERSLRRAGEADEDESLRRCRGKGKGKEKGDDDAASVSMGRPSRPPRRALNRINSSSTY 457
Query: 578 KSEVAKPDRTIKXPG-----VSPLE-APSCALPVPT-LPLTGIPVPP 697
S P+ T G V P + A S A P P P + +P+PP
Sbjct: 458 SSSSCPPEPTSSTSGSTSSWVPPRDNASSWAPPPPRGNPPSWVPLPP 504
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 662 PTLPLTGIPVPPFLPFRXSVAPFL 733
P +P P PPFLPF PFL
Sbjct: 227 PPIPFLTPPPPPFLPFPLPPIPFL 250
>07_01_0466 - 3518315-3521428
Length = 1037
Score = 28.7 bits (61), Expect = 6.7
Identities = 20/79 (25%), Positives = 28/79 (35%)
Frame = +2
Query: 548 PXRASQKSTLKSEVAKPDRTIKXPGVSPLEAPSCALPVPTLPLTGIPVPPFLPFRXSVAP 727
P AS+ +E A + I P P P+ L +P P PP P S
Sbjct: 218 PVMASEAVAASAEAAPEEEQILTPPPPPTPTPTPMLRQVPVPARPPPPPPEAPVERSKHD 277
Query: 728 FLIASPLVXYSQLRWXGXP 784
+ P + +R G P
Sbjct: 278 LVDKMPYLFVRVVRARGLP 296
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 299 NESAN---ARGEAVCVLGALPLPRSLTRCAR 382
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>09_02_0082 - 4060018-4061604
Length = 528
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +2
Query: 638 APSCALPVPTLPLTGIPVPPFLPFRXSVAPFLIASP 745
AP+ +P P P IP PP L V P SP
Sbjct: 254 APAPPVPAPLAPTPPIPTPPALAPPVDVPPGFTVSP 289
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +2
Query: 638 APSCALPVPTLPLTGIPVPPFLPFRXSVAPFLIASP 745
AP+ +P P P IP PP L V P SP
Sbjct: 363 APAPPVPAPPAPTPPIPTPPALAPPADVPPGFTVSP 398
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,693,949
Number of Sequences: 37544
Number of extensions: 442828
Number of successful extensions: 1518
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1511
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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