Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_F18
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    28   2.0  
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    28   2.0  
SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor |Schizo...    27   3.5  
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    27   4.7  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   4.7  
SPBC3H7.08c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.1  

>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 590 EIRHEW*LSNTIPSFIELCLFVFSPKK 670
           EIRH    ++  P FIE C F+F   K
Sbjct: 722 EIRHRGAFTSVYPCFIEYCSFLFECNK 748


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +2

Query: 233 RMGGGKVFGTLGQNDDGLFGKAGYNR-EIFNDDRGQLTGQAYGTRVLGPGGDSTNYG 400
           R   GK  G +G + D     +  +R   F   RG     +Y TRV G GG  T+YG
Sbjct: 162 RQNRGKFIG-VGSDGDSRISTSSKSRFPSFGSSRG-----SYRTRVYGDGGGFTDYG 212


>SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 512

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 264 WDRTTMDYSVKP 299
           WDRTT+DY ++P
Sbjct: 14  WDRTTIDYDIEP 25


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -2

Query: 452 CLCQWQLVRSCWPSPDVHRS*CCHLRVLRPWCRKP 348
           CLC+   +++    P +    CCH    R WC  P
Sbjct: 8   CLCKAIHLKAIIEEPKLS---CCHCETCRIWCSSP 39


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 622  CVGQSPLMPDLCLKTNVWSSV 560
            C+G    MP+  L+T +W+S+
Sbjct: 988  CIGFKSAMPEYTLRTRIWASL 1008


>SPBC3H7.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 120

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = +3

Query: 123 SWCV*TQKYTGLLIMKKNTPSEAYFQSDTPVTSRGTREWEEGRSSALWDRTTMDYSVK 296
           +WCV T  +     M          +    + S+    WE+ +SS+     ++DYS K
Sbjct: 25  TWCVMTYTFGVAGYMLGQRGLLVQHEDQVRIPSKNAHPWEDTKSSSGKSDESLDYSYK 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,610,395
Number of Sequences: 5004
Number of extensions: 81722
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)