Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_F18
(879 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0717 + 27097367-27097621,27097744-27097866,27098136-270983... 34 0.17
02_04_0628 + 24589313-24589472,24589604-24589765,24589850-245899... 33 0.40
01_06_0513 - 29944888-29945943 33 0.40
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631... 31 1.6
05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,816... 31 1.6
04_04_0297 - 24219497-24219853,24221242-24222414 29 4.9
05_03_0164 - 9078814-9079908 28 8.6
>03_05_0717 +
27097367-27097621,27097744-27097866,27098136-27098303,
27098393-27100072
Length = 741
Score = 33.9 bits (74), Expect = 0.17
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 101 LLFFIATVLVCVNAE-VYRSSDYEKEYPIRGLFSKRHPRDVTWDTRMGGGKVF 256
++ I VL CV +Y + E+ YPI+G +S+ +T+D R+ K+F
Sbjct: 461 VVMLILVVLTCVGTHYIYGGNGAEEPYPIKGKYSQFTLLTMTYDARLWNLKMF 513
>02_04_0628 +
24589313-24589472,24589604-24589765,24589850-24589983,
24590108-24590275,24590481-24590562,24590734-24591512
Length = 494
Score = 32.7 bits (71), Expect = 0.40
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -2
Query: 575 RLVFCDQIPS--RPYRRLRCGCSYQDPTHRSPR 483
R++ CD PS R RL C CSYQ +SPR
Sbjct: 29 RILLCDSDPSSSREVLRLLCNCSYQVTCAKSPR 61
>01_06_0513 - 29944888-29945943
Length = 351
Score = 32.7 bits (71), Expect = 0.40
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 114 SPQSWCV*TQKYT-GLLIMKKNTPSEAYFQSDTPVTSRGTREWEEGRSSALWD 269
SP+S T +Y G + P+ A + P +RGT EW EG + AL D
Sbjct: 57 SPRSKRRRTDRYAQGFEFAPRPAPATATATAPAPTPARGTPEWSEGSTFALLD 109
>12_02_0522 - 19960092-19960595,19962737-19962880,19963042-19963131,
19963215-19963320,19963400-19963574,19963849-19963951,
19964382-19964636,19964726-19964803,19964908-19965000,
19965091-19965222,19965898-19966002,19966127-19966201,
19966284-19966340,19966419-19966532,19966613-19966756,
19966886-19966969,19967071-19967164,19967244-19967369,
19967507-19967580,19967672-19967875,19968234-19968388,
19968860-19968947,19969505-19969730,19970235-19970286,
19970766-19970958,19973221-19973314,19973744-19973788,
19974874-19974896
Length = 1210
Score = 30.7 bits (66), Expect = 1.6
Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 9/110 (8%)
Frame = +2
Query: 299 GYNREIFNDDRGQLTGQAYGTRVLGPGGDSTNYGGRLDW--ANKNAQAAIDINRQIG--- 463
G E+ D R +L G+ + G G+ GG A +A + + +
Sbjct: 1073 GNELELAGDHREELGGRGDELELAGDHGEELGGGGTSSSSPATTGRRAMEETSSSLPAAL 1132
Query: 464 GRSGMTASGSGVWD---LDKNTHISAGGMVSKE-FGHRRPDVGLQAEIRH 601
G G T SG G WD L+ + GG + G RR +GL + I H
Sbjct: 1133 GTGGGTESGGGAWDELELELADGVRRGGKERRRAAGRRRRALGLGSGIGH 1182
>05_03_0076 +
8164466-8164511,8164643-8164698,8165529-8165867,
8165938-8166012,8166674-8166846,8168697-8168795,
8169002-8169161,8169321-8169464,8169551-8169723,
8169796-8169991,8170061-8170258,8170864-8171016,
8171838-8171959,8172037-8172136,8172221-8172316,
8172400-8172530,8173717-8173819,8174373-8174555,
8174632-8174724,8174818-8174853,8175672-8175773,
8176310-8176472,8176557-8176678,8176994-8177158,
8177667-8177849,8178679-8178831,8179136-8179288,
8179373-8179444,8179530-8179664,8179739-8179800,
8179999-8180096,8180628-8180737,8180832-8181005,
8181092-8181157,8181847-8181915,8181989-8182099,
8182418-8182558,8182638-8182766,8182864-8183029,
8183174-8183388,8184883-8185089,8185501-8185572,
8185897-8186010,8186090-8186281,8186489-8186569,
8186654-8186728,8186812-8186878,8187292-8187452,
8187943-8188116,8188209-8188337,8188421-8188504,
8188589-8188650,8188728-8188800,8189008-8189142,
8189790-8189960,8190054-8190319,8190440-8190458
Length = 2448
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +2
Query: 95 SKLLFFIATVLVCVNAEVYRSSDYEKEYPIRGLFSKRHPRDVTWDTRMGGGKVFGTLGQN 274
SK +AT+ + + Y S Y + P+ GL K ++ W TR+ KV G +G
Sbjct: 737 SKREVAVATLGQVIQSTGYVISPYNEYPPLLGLLLKLLNGELEWSTRLEVLKVLGIMGAL 796
Query: 275 D 277
D
Sbjct: 797 D 797
>04_04_0297 - 24219497-24219853,24221242-24222414
Length = 509
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -1
Query: 711 TLVIAKIYTEANSSFFGEKTNKHN 640
TL + KI+++ +S+FFGE T K N
Sbjct: 440 TLNVRKIFSDHDSAFFGECTQKFN 463
>05_03_0164 - 9078814-9079908
Length = 364
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +2
Query: 365 VLGPGGDSTNYGGRLDWANKNAQAAIDINRQIGGRSGMTASGSGVWDLDKNTHISAGGMV 544
V+G G +++ LD+ + A A + NR+ G ++ G + L N H S G
Sbjct: 85 VVGDAGATSDGLLLLDFTDIRATARVVANRRAGAQAQAQQQGKKLTGLSFNLHNSRGDTQ 144
Query: 545 SKEFG--HRRPDV 577
+E + PD+
Sbjct: 145 ERELAGVNTNPDI 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,773,148
Number of Sequences: 37544
Number of extensions: 563694
Number of successful extensions: 1271
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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