Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_F17
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    27   2.7  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    27   3.5  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   6.2  
SPAC31G5.07 |||conjugation protein |Schizosaccharomyces pombe|ch...    26   8.2  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    26   8.2  

>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 511 WKNQLLSLKIQKLKYKLPSLKFHKKKNLV-LLMQXVLP 621
           WK Q+LSL +  ++Y   ++  H +  L+  + Q VLP
Sbjct: 373 WKPQVLSLALHSIEYLASAIVNHNQNTLLPYIEQFVLP 410


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +1

Query: 622 TQLPSFPTWVKKIDLAPTVKSDAAAIPEIKTPEXADAPKLADNPVNEDKPADISPDAPK 798
           T+L +F T+ K+ D   T ++   +I         D+ K+   P  +  P    PDAPK
Sbjct: 772 TELATFTTY-KEDDTTTTTRTSIDSISSKYLESPVDSQKVNRTPNLQSVPFFRQPDAPK 829


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 398 VFWGYIVLFGLWYSGYLVVTNW 333
           VFW +IVL GL+Y  Y  V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377


>SPAC31G5.07 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 593 RFFFL*NFSDGSLYFSF*IFRLSSWFFHFNISRFCFSIGN 474
           R  FL N      +FSF    +++ F H  +S F  ++GN
Sbjct: 124 RLEFLRNIRISLSFFSFFSILVTALFAHVAVSSFVMAVGN 163


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 18/72 (25%), Positives = 29/72 (40%)
 Frame = +1

Query: 580 KKKNLVLLMQXVLPTQLPSFPTWVKKIDLAPTVKSDAAAIPEIKTPEXADAPKLADNPVN 759
           K+K     +Q  LP+         KK D+A         I ++ +P   DA   +D P+ 
Sbjct: 486 KEKKPTKDLQSPLPSVEEDSSNRDKKTDIADLHTDSKVGIADVLSPISPDAALQSDGPLK 545

Query: 760 EDKPADISPDAP 795
           + K  + S   P
Sbjct: 546 KAKEPEESSITP 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,503
Number of Sequences: 5004
Number of extensions: 48888
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)