Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_F17
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047661-4|AAC04435.2|  931|Caenorhabditis elegans Hypothetical ...    30   2.5  
AF100662-2|AAC68976.1|  478|Caenorhabditis elegans Hypothetical ...    29   5.8  
U00025-4|AAN65312.1|  606|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AB110824-1|BAD80739.1|  606|Caenorhabditis elegans chondroitin p...    28   7.7  
AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin p...    28   7.7  

>AF047661-4|AAC04435.2|  931|Caenorhabditis elegans Hypothetical
           protein M70.1 protein.
          Length = 931

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 652 KKIDLAPTVKSDAAAIPEIKTPEXADAPKLADNPVNEDKPADIS 783
           KK D  P+       +P   TP+ A  P     P  ++KP D++
Sbjct: 812 KKKDTKPSAPKPKPDVPVNPTPQTAKVPVAPAPPAKDEKPKDVN 855


>AF100662-2|AAC68976.1|  478|Caenorhabditis elegans Hypothetical
           protein H34C03.1 protein.
          Length = 478

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
 Frame = +1

Query: 481 MLKQNLLILKWKNQLLSLKIQKLKYKLPSLKFHKKKNLVLLMQXVLPTQL-PSFPTWVKK 657
           M  ++LL L WK Q  +L ++ +  +L S    + +    L +  L  +  P+FP  VKK
Sbjct: 259 MKNKSLLELGWKQQT-ALALEAILERLESESVTQSEVESALHKTFLVVKAEPAFPQPVKK 317

Query: 658 IDLAPTVKSDAAAIPEIKTPEXADAPKLADNPVNEDKP 771
           ID+   VK+     PE+   E     +   + V E  P
Sbjct: 318 IDV--EVKNQDQKNPEVIVIEKGTGERTDIDMVFEGTP 353


>U00025-4|AAN65312.1|  606|Caenorhabditis elegans Hypothetical
           protein PAR2.4b protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +3

Query: 192 VSLAMPVAEEKDVVPAQPIL 251
           V++ +PVA EKDV+PA+ +L
Sbjct: 317 VTVVIPVASEKDVLPARKLL 336


>U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical
           protein PAR2.4a protein.
          Length = 804

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +3

Query: 192 VSLAMPVAEEKDVVPAQPIL 251
           V++ +PVA EKDV+PA+ +L
Sbjct: 515 VTVVIPVASEKDVLPARKLL 534


>AB110824-1|BAD80739.1|  606|Caenorhabditis elegans chondroitin
           polymerizing factor-S protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +3

Query: 192 VSLAMPVAEEKDVVPAQPIL 251
           V++ +PVA EKDV+PA+ +L
Sbjct: 317 VTVVIPVASEKDVLPARKLL 336


>AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin
           polymerizing factor protein.
          Length = 804

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +3

Query: 192 VSLAMPVAEEKDVVPAQPIL 251
           V++ +PVA EKDV+PA+ +L
Sbjct: 515 VTVVIPVASEKDVLPARKLL 534


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,698,355
Number of Sequences: 27780
Number of extensions: 274557
Number of successful extensions: 826
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)