Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_F17
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   4.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   8.6  

>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 469 PRFPMLKQNLLILKWKNQLLSLKIQKLKYKLPSLKF 576
           P F ML QN+L    + + L  +  + + ++P +KF
Sbjct: 418 PAFYMLYQNILSYFLRYKKLQPQYSQSELQMPGVKF 453


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = -1

Query: 530  LSSWFFHFNISRFC 489
            +S+W +H N+++ C
Sbjct: 1674 MSTWGYHHNVNKHC 1687


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 531 PEDSKTEVQATVAEISQEEK 590
           P D  T+  +T A++ QEE+
Sbjct: 336 PRDLTTQTVSTTADVLQEEE 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,151
Number of Sequences: 438
Number of extensions: 3186
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)