Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_F16
         (894 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    31   0.84 
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    31   0.84 
Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical pr...    31   1.5  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   5.9  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   5.9  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   5.9  
AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen prot...    29   5.9  
Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = +2

Query: 740 PGXTPXEXPPXXXG--APPPGSXPX*XPXPPG 829
           PG TP   PP   G   PPP   P   P PPG
Sbjct: 281 PGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPG 312


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = +2

Query: 740 PGXTPXEXPPXXXG--APPPGSXPX*XPXPPG 829
           PG TP   PP   G   PPP   P   P PPG
Sbjct: 291 PGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPG 322


>Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical protein
            T16G12.5 protein.
          Length = 1142

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = +3

Query: 165  PKEDNSINTLAESAKKTIEELREKVESALAP----ETVXKNFGTMVDSFNEFYKNLKPAE 332
            P ED S N   + AKK + +L+  V    AP     T  + +   VD  NE+ + L   E
Sbjct: 834  PSEDVSFNLAVDEAKKLLRDLKIDVNQVNAPTLPQRTDRQRYNQQVDVCNEWIEELHDDE 893


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
 Frame = +2

Query: 740 PGXTPXEXPPXXXGAPPP-----GSXPX*XPXPPGSXRXXAXXYPXP 865
           P   P   PP   G PPP     G  P   P PPG  +      P P
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
 Frame = +2

Query: 740 PGXTPXEXPPXXXGAPPP-----GSXPX*XPXPPGSXRXXAXXYPXP 865
           P   P   PP   G PPP     G  P   P PPG  +      P P
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
 Frame = +2

Query: 740 PGXTPXEXPPXXXGAPPP-----GSXPX*XPXPPGSXRXXAXXYPXP 865
           P   P   PP   G PPP     G  P   P PPG  +      P P
Sbjct: 327 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 373


>AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen protein
           103 protein.
          Length = 371

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 22/66 (33%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
 Frame = +2

Query: 671 PLPPXXVSRSXXEVXGXFSXIXXPGXTPXEXPPXXXGAPPPGSXPX*XPXPPG-SXRXXA 847
           P  P    R      G  S    PG      PP   GA P G      P PPG S R  A
Sbjct: 235 PGAPGQPGRPGKNAQGGSSRPGPPGPAGPPGPPGNNGA-PGGGYGVGPPGPPGPSGRPGA 293

Query: 848 XXYPXP 865
              P P
Sbjct: 294 PGQPGP 299


>Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical
           protein F54B11.2 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
 Frame = +3

Query: 696 GPXGRCXXVFPALXXXAXPPRKXXLPLXGXXXPVPXPXEX--PXPPGPSG 839
           GP G      PA    A PP     P      P   P     P PPGP+G
Sbjct: 211 GPAGESTYPEPAAPGPAGPPGPAGPPGPDGASPTAAPGAAGPPGPPGPAG 260


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,119,660
Number of Sequences: 27780
Number of extensions: 342546
Number of successful extensions: 1322
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)