Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_F15
         (880 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0059 - 394001-394708                                             31   1.6  
12_02_1174 - 26696869-26698191                                         30   2.1  
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047...    29   4.9  

>08_01_0059 - 394001-394708
          Length = 235

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/46 (30%), Positives = 14/46 (30%)
 Frame = +3

Query: 693 PPPPXXPXXPPXXXXXXXXXPXXXPXXXXXXPXXPXPXXXXXXXPP 830
           PPPP  P  PP         P   P      P  P P       PP
Sbjct: 11  PPPPATPPPPPRRAPPPPSPPIRPPPPPTPRPYAPPPPSHPLAPPP 56



 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/71 (23%), Positives = 17/71 (23%)
 Frame = +2

Query: 608 PPPPXXXXXXXXXXXXXXPXXXXXPPXXPPXPXXPXXXPXXXXXXXXXXXXXXXXPXXXP 787
           PPPP              P     PP  PP    P   P                P   P
Sbjct: 2   PPPPPPRRAPPPPATPPPPPRRAPPPPSPPIRPPPPPTPRPYAPPPPSHPLAPPPPHISP 61

Query: 788 PXXXPXPXXXP 820
           P   P P   P
Sbjct: 62  PAPVPPPPSPP 72


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/63 (25%), Positives = 16/63 (25%)
 Frame = +3

Query: 684 PXXPPPPXXPXXPPXXXXXXXXXPXXXPXXXXXXPXXPXPXXXXXXXPPXXXXXXXXXXX 863
           P  PPPP  P  P          P   P      P  P P       PP           
Sbjct: 156 PPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPPPTRPPSVKPPVVQPKPQPPPT 215

Query: 864 XPP 872
            PP
Sbjct: 216 LPP 218



 Score = 28.3 bits (60), Expect = 8.6
 Identities = 20/90 (22%), Positives = 20/90 (22%), Gaps = 1/90 (1%)
 Frame = +3

Query: 606 PXPPXXXXXXXXXXXXXXPXXXXXXXPXXPPPPXXPXXPPXXXXXXXXXPXXXPXXXXXX 785
           P PP              P       P  PPPP  P  PP         P   P      
Sbjct: 124 PPPPPPRTRTRVEPPHRPPPVKPQPPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPP 183

Query: 786 P-XXPXPXXXXXXXPPXXXXXXXXXXXXPP 872
               P P       PP            PP
Sbjct: 184 SLQPPSPPPPPPTRPPSVKPPVVQPKPQPP 213


>07_03_1530 + 27502546-27502671,27503487-27503561,27504670-27504746,
            27505576-27507522,27508478-27508946,27509898-27510079,
            27510746-27511208,27511295-27511691,27511810-27511937,
            27512106-27512273,27512452-27512559,27512830-27512838
          Length = 1382

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/49 (28%), Positives = 14/49 (28%)
 Frame = +3

Query: 684  PXXPPPPXXPXXPPXXXXXXXXXPXXXPXXXXXXPXXPXPXXXXXXXPP 830
            P  PPPP  P  PP         P          P  P P       PP
Sbjct: 1163 PLPPPPPVAPFHPPGPHFSGPSVPPHHGNNYHQPPSVPPPNNAYHLQPP 1211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,999,120
Number of Sequences: 37544
Number of extensions: 277518
Number of successful extensions: 1375
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)