Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_F13
         (817 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9FLQ7 Cluster: Gb|AAD23008.1; n=1; Arabidopsis thalian...    38   0.40 
UniRef50_A2DM28 Cluster: Diaphanous, putative; n=1; Trichomonas ...    33   8.6  

>UniRef50_Q9FLQ7 Cluster: Gb|AAD23008.1; n=1; Arabidopsis
            thaliana|Rep: Gb|AAD23008.1 - Arabidopsis thaliana
            (Mouse-ear cress)
          Length = 1289

 Score = 37.5 bits (83), Expect = 0.40
 Identities = 27/95 (28%), Positives = 28/95 (29%), Gaps = 1/95 (1%)
 Frame = +3

Query: 507  PPXKXPKXGXXPPXGVFXKXFRGEKNFXAPPXXXXPXPXGPPPXXFLXXXXXXXXXXXXX 686
            PP   P  G  PP       + G      PP      P  PPP  F              
Sbjct: 959  PPPPPPSYGSPPPPPPPPPGY-GSPPPPPPPPPSYGSPPPPPPPPFSHVSSIPPPPPPPP 1017

Query: 687  XXGG-PXXXKKXPXGGXXPPXXFXPQXXGGXXPPP 788
              GG P      P  G  PP    P   GG  PPP
Sbjct: 1018 MHGGAPPPPPPPPMHGGAPPPPPPPPMHGGAPPPP 1052



 Score = 33.5 bits (73), Expect = 6.5
 Identities = 23/94 (24%), Positives = 25/94 (26%)
 Frame = +3

Query: 507  PPXKXPKXGXXPPXGVFXKXFRGEKNFXAPPXXXXPXPXGPPPXXFLXXXXXXXXXXXXX 686
            PP   P  G  PP       +        PP         PPP   +             
Sbjct: 972  PPPPPPGYGSPPPPPPPPPSYGSPPPPPPPPFSHVSSIPPPPPPPPMHGGAPPPPPPPPM 1031

Query: 687  XXGGPXXXKKXPXGGXXPPXXFXPQXXGGXXPPP 788
              G P      P  G  PP    P   GG  PPP
Sbjct: 1032 HGGAPPPPPPPPMHGGAPPPPPPPPMHGGAPPPP 1065



 Score = 33.1 bits (72), Expect = 8.6
 Identities = 25/94 (26%), Positives = 25/94 (26%)
 Frame = +3

Query: 507  PPXKXPKXGXXPPXGVFXKXFRGEKNFXAPPXXXXPXPXGPPPXXFLXXXXXXXXXXXXX 686
            PP   P  G  PP         G      PP      P  PPP  F              
Sbjct: 1025 PPPPPPMHGGAPPPPPPPPMHGGAPPPPPPPPMHGGAPPPPPPPMF----GGAQPPPPPP 1080

Query: 687  XXGGPXXXKKXPXGGXXPPXXFXPQXXGGXXPPP 788
              GG       P  G  PP    P   G   PPP
Sbjct: 1081 MRGGAPPPPPPPMRGGAPPPPPPPMRGGAPPPPP 1114


>UniRef50_A2DM28 Cluster: Diaphanous, putative; n=1; Trichomonas
           vaginalis G3|Rep: Diaphanous, putative - Trichomonas
           vaginalis G3
          Length = 620

 Score = 33.1 bits (72), Expect = 8.6
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +1

Query: 694 GXPPXXKXPXGGGXPPPXXFXPKXGGVXXPXP 789
           G PP    P GG  PPP    PK G    P P
Sbjct: 531 GAPPPPPPPAGGAPPPPPPPPPKGGAPPPPPP 562


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 560,030,664
Number of Sequences: 1657284
Number of extensions: 8525558
Number of successful extensions: 16239
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15301
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 70789333940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)