Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_F13
         (817 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    24   1.7  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   3.8  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   3.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.9  

>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 264 LPEFLPRGHSKXPPPXGGFH 323
           LP  LP  H + PPP G +H
Sbjct: 11  LPTVLP--HQEVPPPFGYYH 28


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 83  RREVWSKSXRGKCR 42
           R +VW K+ R KCR
Sbjct: 170 RVQVWFKNRRAKCR 183


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 83  RREVWSKSXRGKCR 42
           R +VW K+ R KCR
Sbjct: 112 RVQVWFKNRRAKCR 125


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +3

Query: 210  WQXASWGPKGSEWXERXXLPEFL 278
            WQ   W P      E+  LPE L
Sbjct: 1369 WQPTEWHPPIPPTSEKPPLPEEL 1391


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,955
Number of Sequences: 336
Number of extensions: 1790
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22310335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)