Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_F13
         (817 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    32   0.43 
AF067219-3|AAC17027.1|   74|Caenorhabditis elegans Hypothetical ...    29   3.0  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   5.3  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   5.3  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   5.3  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    28   9.2  

>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 22/71 (30%), Positives = 23/71 (32%), Gaps = 2/71 (2%)
 Frame = +3

Query: 582 NFXAPPXXXXPXPXGPPPXXFLXXXXXXXXXXXXXXXGGPXXXKKXPXGGXXPPXXFXPQ 761
           NF  PP    P    PPP  F                GGP      P GG   P  + P 
Sbjct: 377 NFAPPPQSGPPGAFAPPPSAF----------GAPQGPGGPGGYGPPPPGGPGAPGSYGPP 426

Query: 762 --XXGGXXPPP 788
               GG  PPP
Sbjct: 427 QGGPGGFGPPP 437


>AF067219-3|AAC17027.1|   74|Caenorhabditis elegans Hypothetical
           protein R12E2.6 protein.
          Length = 74

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = +1

Query: 694 GXPPXXKXPXGGG-XPPPXXFXPKXGGVXXPXP 789
           G PP    P GGG  PPP  F P    +  P P
Sbjct: 34  GPPPACGNPCGGGFGPPPPPFGPVGYALPPPPP 66


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 24/86 (27%), Positives = 25/86 (29%)
 Frame = +3

Query: 531 GXXPPXGVFXKXFRGEKNFXAPPXXXXPXPXGPPPXXFLXXXXXXXXXXXXXXXGGPXXX 710
           G  PP G+      G      PP    P   GPPP                   GGP   
Sbjct: 712 GPPPPPGL--PPITGGPPPPPPPGGLPPITGGPPPPP--------PPGGLPPISGGPPPP 761

Query: 711 KKXPXGGXXPPXXFXPQXXGGXXPPP 788
              P G   PP    P    G  PPP
Sbjct: 762 PPPPGGCPPPPPPPPPGGFKGGPPPP 787


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 24/86 (27%), Positives = 25/86 (29%)
 Frame = +3

Query: 531 GXXPPXGVFXKXFRGEKNFXAPPXXXXPXPXGPPPXXFLXXXXXXXXXXXXXXXGGPXXX 710
           G  PP G+      G      PP    P   GPPP                   GGP   
Sbjct: 712 GPPPPPGL--PPITGGPPPPPPPGGLPPITGGPPPPP--------PPGGLPPISGGPPPP 761

Query: 711 KKXPXGGXXPPXXFXPQXXGGXXPPP 788
              P G   PP    P    G  PPP
Sbjct: 762 PPPPGGCPPPPPPPPPGGFKGGPPPP 787


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 24/86 (27%), Positives = 25/86 (29%)
 Frame = +3

Query: 531 GXXPPXGVFXKXFRGEKNFXAPPXXXXPXPXGPPPXXFLXXXXXXXXXXXXXXXGGPXXX 710
           G  PP G+      G      PP    P   GPPP                   GGP   
Sbjct: 295 GPPPPPGL--PPITGGPPPPPPPGGLPPITGGPPPPP--------PPGGLPPISGGPPPP 344

Query: 711 KKXPXGGXXPPXXFXPQXXGGXXPPP 788
              P G   PP    P    G  PPP
Sbjct: 345 PPPPGGCPPPPPPPPPGGFKGGPPPP 370


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -2

Query: 783  GGXXPPXFGXKXXXGGXPPPXG 718
            GG  PP  G     GG PPP G
Sbjct: 1557 GGLPPPHGGMNGWRGGPPPPRG 1578


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,497,239
Number of Sequences: 27780
Number of extensions: 222468
Number of successful extensions: 434
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)