Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_F12
         (898 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0824 - 32243495-32244319,32244449-32244859                       46   3e-05
11_02_0011 - 7337618-7338496,7338596-7338991                           44   2e-04
11_02_0012 - 7346282-7347136,7347234-7347593                           38   0.011
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502...    38   0.014
11_01_0750 - 6315126-6315896,6316371-6316784                           35   0.10 
03_05_0294 + 22855503-22855946,22856346-22856399                       32   0.54 
11_01_0771 + 6453130-6454488                                           32   0.71 
09_06_0317 - 22265786-22267618,22267874-22268446,22268546-222686...    31   1.6  
06_01_0059 - 510856-511499,511595-511805                               30   2.9  

>01_06_0824 - 32243495-32244319,32244449-32244859
          Length = 411

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 10/152 (6%)
 Frame = +3

Query: 234 DKNVIASPLGVMLLLSLYESGAGAQSKEEIREILG--GGEAQESTHTYGLLNQRYAEFDP 407
           DKN+  SPL +   L+L  +GA  ++ ++I   LG  GG A  +  ++  L     +  P
Sbjct: 31  DKNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPAHAALASHVALCSLADDSGP 90

Query: 408 ------KFLTVAXKIYVSDQYKLADAFSRT-ANLFRSXVDXINFSAP-KNAADIINRWAD 563
                   +  A  ++V    +L  A++R  A+ +R+    ++F    + A   IN W +
Sbjct: 91  GDDRGGPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFE 150

Query: 564 XQTPGHLXDSCQRRQIEPXTAVAMFNVIFFQG 659
             T G + D   +  ++  T   + N ++F+G
Sbjct: 151 SATAGRIKDFLPKDAVDRATPAVLGNALYFKG 182


>11_02_0011 - 7337618-7338496,7338596-7338991
          Length = 424

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 35/153 (22%), Positives = 72/153 (47%), Gaps = 8/153 (5%)
 Frame = +3

Query: 225 LADDKNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGG---EAQESTHT---YGLLNQ 386
           ++ +KN++ SP  +   L+L  +GA   + +E+  +LG     + +ES       GL ++
Sbjct: 27  VSSNKNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDDLEESVRRAVEVGLADE 86

Query: 387 RYAEFDPKFLTVAXKIYVSDQYKLADAF-SRTANLFRSXVDXINFSA-PKNAADIINRWA 560
             A   P+ ++ A  ++  +  +L  A+ +  A  +++     NF   PK +   IN+W 
Sbjct: 87  S-ASGGPR-VSDACGVWHDETLELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWV 144

Query: 561 DXQTPGHLXDSCQRRQIEPXTAVAMFNVIFFQG 659
              T   + +      +   TA+ + N I+F+G
Sbjct: 145 SKATNKLIPEILPDGSVHVDTALVLVNAIYFKG 177


>11_02_0012 - 7346282-7347136,7347234-7347593
          Length = 404

 Score = 37.9 bits (84), Expect = 0.011
 Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 11/162 (6%)
 Frame = +3

Query: 207 LKESYNLADD-----KNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGG---EAQEST 362
           L+ +  LADD     +NV+ SP+ +   L+L  SGA   + +E+  +LG     + +ES 
Sbjct: 16  LRLAKRLADDGDNSNRNVVFSPVSLYAALALVASGARGTTLDELVALLGAASLDDLEESV 75

Query: 363 HT---YGLLNQRYAEFDPKFLTVAXKIYVSDQYKLADAFSRTANLFRSXVDXINFSAPKN 533
                 GL ++  +E     ++ A  ++  ++  L  A+ R A+  R          PK+
Sbjct: 76  RRAVEVGLADE--SESGGPRVSYACGVWHDERLALKPAY-RAADFQRQ---------PKS 123

Query: 534 AADIINRWADXQTPGHLXDSCQRRQIEPXTAVAMFNVIFFQG 659
           +   IN+W    T   + +      +   TA+ + N I+F+G
Sbjct: 124 SRKKINKWVSKATNKLIREILPDGSVHGGTALVLVNAIYFKG 165


>03_05_0293 +
           22849103-22849513,22849670-22849756,22850156-22850284,
           22850507-22851262,22853474-22854250
          Length = 719

 Score = 37.5 bits (83), Expect = 0.014
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +3

Query: 237 KNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGGEAQESTHTY 371
           +NV  SPL + + LSL  +GAG  +++++   LGG  + E  H +
Sbjct: 35  RNVAFSPLSLHVALSLVAAGAGGATRDQLASALGGPGSAEGLHAF 79



 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 546 INRWADXQTPGHLXDSCQRRQIEPXTAVAMFNVIFFQGALA 668
           +N W D  T G + +    R I   T + + N ++F+GA A
Sbjct: 469 VNSWVDRVTSGLIKNIATPRSINHNTKLVLANALYFKGAWA 509


>11_01_0750 - 6315126-6315896,6316371-6316784
          Length = 394

 Score = 34.7 bits (76), Expect = 0.10
 Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 12/152 (7%)
 Frame = +3

Query: 240 NVIASPLGVMLLLSLYESGAGAQSKEEIREILG------GGEAQE----STHTYGLLNQR 389
           N   S   V + L+L   GA   ++ ++ + LG      GG A      S     +L  R
Sbjct: 33  NAAVSAPAVHVSLALAAGGARGATRRQVLQALGCGGGGRGGAADAANVASRVVKRVLRDR 92

Query: 390 YAEFDPKFLTVAXKIYVSDQYKLADAFSRTA-NLFRSXVDXINF-SAPKNAADIINRWAD 563
                P+ L  A  ++      L+  F   A N++ S     +F + P++A D IN W  
Sbjct: 93  STSGGPR-LAFAGGVWADASRSLSPEFVGLAGNVYGSAAKKADFKNKPEDAPDQINSWVK 151

Query: 564 XQTPGHLXDSCQRRQIEPXTAVAMFNVIFFQG 659
             T G +        I+  T + + + ++F+G
Sbjct: 152 DSTKGTVTTLLPAGTIDQNTGLVLGSALYFRG 183


>03_05_0294 + 22855503-22855946,22856346-22856399
          Length = 165

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +3

Query: 228 ADDKNVIASPLGVMLLLSLYESGAGAQSKEEIREILG--GGEAQESTHTY 371
           A   NV  SPL + + LSL  +GAG  +++++  +LG  G    E  H +
Sbjct: 41  AGGSNVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGVPGRGTAEGLHAF 90


>11_01_0771 + 6453130-6454488
          Length = 452

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 546 INRWADXQTPGHLXDSCQRRQIEPXTAVAMFNVIFFQG 659
           IN WA   T   + D    R + P TAV + N I+F+G
Sbjct: 177 INAWARRATGKLITDVLPPRSVGPETAVVLGNAIYFKG 214



 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 237 KNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGGEAQE 356
           +N+  SPL V   LSL  +GA   + +EI  +LG     +
Sbjct: 37  RNLAFSPLSVHAALSLAAAGAAGGTLDEILAVLGAASRDD 76


>09_06_0317 -
           22265786-22267618,22267874-22268446,22268546-22268677,
           22268931-22269137,22269287-22269388,22270742-22271032
          Length = 1045

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 357 TLEPPLPQGFPLSLPWTVHRLQTRTRKAAAS 265
           +L PPLP G PLS P+     QT  + A  S
Sbjct: 751 SLRPPLPPGLPLSSPFVCPTTQTSEKAAPLS 781


>06_01_0059 - 510856-511499,511595-511805
          Length = 284

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +3

Query: 267 MLLLSLYESGAGAQSKEEIREILGGGEAQESTHTYGLLNQRYAEFD-PKFLTVAXKIYVS 443
           +LL  +   GAG  S   ++   GGG   ++ H +G+  Q +A  D    LTV    Y +
Sbjct: 197 LLLYVMNVGGAGDVSSLSVKTSGGGGAWIQAAHNWGITYQVFAALDNSDGLTVKLTTYST 256

Query: 444 DQYKL--ADAFS 473
            Q  +  +DA S
Sbjct: 257 PQQTIIVSDAIS 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,202,930
Number of Sequences: 37544
Number of extensions: 411782
Number of successful extensions: 1070
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)