Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_F08
         (864 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical pr...    30   1.9  
DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.      30   1.9  
Z49911-6|CAA90132.1|  831|Caenorhabditis elegans Hypothetical pr...    28   9.9  
U50197-7|AAM54189.1|  796|Caenorhabditis elegans Abnormal dauer ...    28   9.9  
U50197-6|AAK68348.1|  892|Caenorhabditis elegans Abnormal dauer ...    28   9.9  
U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer ...    28   9.9  
AF005205-1|AAB61748.1|  796|Caenorhabditis elegans DAF-3 protein.      28   9.9  

>Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical
           protein ZK520.3a protein.
          Length = 1383

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 424 DYANHINDAQNSTNQLIDFVCYKDGDRIALFIAEGG 531
           D   ++ DA N T +LID    K+GD +A+ +A  G
Sbjct: 62  DKKGNVIDALNPTGKLIDIAWDKEGDVLAIAVANTG 97


>Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical
           protein ZK520.3a protein.
          Length = 1383

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 424 DYANHINDAQNSTNQLIDFVCYKDGDRIALFIAEGG 531
           D   ++ DA N T +LID    K+GD +A+ +A  G
Sbjct: 62  DKKGNVIDALNPTGKLIDIAWDKEGDVLAIAVANTG 97


>DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.
          Length = 1383

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 424 DYANHINDAQNSTNQLIDFVCYKDGDRIALFIAEGG 531
           D   ++ DA N T +LID    K+GD +A+ +A  G
Sbjct: 62  DKKGNVIDALNPTGKLIDIAWDKEGDVLAIAVANTG 97


>Z49911-6|CAA90132.1|  831|Caenorhabditis elegans Hypothetical
           protein M28.8 protein.
          Length = 831

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 698 HTDTRKHGGITDQVHAPKTLLATPVCPKT 784
           ++ TRK GG  DQV   + L ATP+   T
Sbjct: 715 YSGTRKLGGKKDQVRPTEELWATPILSST 743


>U50197-7|AAM54189.1|  796|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform c protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 679 NPSKSVPHRHPQTWRNH*SSSCAKDSPCHXG-LPQDRLIAPPXL 807
           +P    PH+ PQ  +NH +S      P H G +P D  I+ P L
Sbjct: 414 HPFNQQPHQPPQLSQNH-TSQQGSHQPGHQGQVPNDPPISRPVL 456


>U50197-6|AAK68348.1|  892|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform a protein.
          Length = 892

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 679 NPSKSVPHRHPQTWRNH*SSSCAKDSPCHXG-LPQDRLIAPPXL 807
           +P    PH+ PQ  +NH +S      P H G +P D  I+ P L
Sbjct: 510 HPFNQQPHQPPQLSQNH-TSQQGSHQPGHQGQVPNDPPISRPVL 552


>U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform b protein.
          Length = 864

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 679 NPSKSVPHRHPQTWRNH*SSSCAKDSPCHXG-LPQDRLIAPPXL 807
           +P    PH+ PQ  +NH +S      P H G +P D  I+ P L
Sbjct: 482 HPFNQQPHQPPQLSQNH-TSQQGSHQPGHQGQVPNDPPISRPVL 524


>AF005205-1|AAB61748.1|  796|Caenorhabditis elegans DAF-3 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 679 NPSKSVPHRHPQTWRNH*SSSCAKDSPCHXG-LPQDRLIAPPXL 807
           +P    PH+ PQ  +NH +S      P H G +P D  I+ P L
Sbjct: 414 HPFNQQPHQPPQLSQNH-TSQQGSHQPGHQGQVPNDPPISRPVL 456


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,554,752
Number of Sequences: 27780
Number of extensions: 386472
Number of successful extensions: 1054
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)