Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_F07
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    35   0.011
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    27   4.0  
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    27   4.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   9.3  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 35.1 bits (77), Expect = 0.011
 Identities = 20/66 (30%), Positives = 24/66 (36%)
 Frame = +1

Query: 130 SSSIKQGCSAPPXGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVAT 309
           S+S     S PP G  T        P  T   + PP   ST S G    P  +  TS  T
Sbjct: 282 STSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTT 341

Query: 310 NGQSTP 327
           +    P
Sbjct: 342 STSIPP 347



 Score = 35.1 bits (77), Expect = 0.011
 Identities = 20/66 (30%), Positives = 24/66 (36%)
 Frame = +1

Query: 130 SSSIKQGCSAPPXGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVAT 309
           S+S     S PP G  T        P  T   + PP   ST S G    P  +  TS  T
Sbjct: 336 STSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTT 395

Query: 310 NGQSTP 327
           +    P
Sbjct: 396 STSIPP 401


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 232 PPSATSTFSHGQGDEPKATNGTSVA-TNGQST 324
           PP++TS  S+G G  P+   G+S    NG  T
Sbjct: 420 PPTSTSVSSYGLGKTPQPAYGSSSPYVNGHQT 451


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 432 RSPQARQGPPRRVLLGLVVNRTAPVG--CESVQSNL 533
           ++PQ +  PP   L  + VN+  PVG  C+  + NL
Sbjct: 60  KTPQEQTNPPTVGLSKIFVNKKYPVGEVCDYAEDNL 95


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +1

Query: 160 PPXGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTP 327
           PP    +N   S P PP+ GR A PP    + +   G +P   + +   +N  + P
Sbjct: 339 PPPPPRSNAAGSIPLPPQ-GRSAPPPPPPRS-APSTGRQPPPLSSSRAVSNPPAPP 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,566,678
Number of Sequences: 5004
Number of extensions: 43565
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)