Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_F07
(782 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0450 + 3185342-3185645,3185761-3185837,3185948-3186028,318... 31 0.78
02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496... 31 1.0
01_07_0082 - 40965947-40967023 31 1.0
01_05_0564 + 23312419-23312987,23314652-23314751,23314832-233150... 30 1.8
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161... 29 4.2
04_03_0358 - 14856490-14856573,14856829-14856874,14857116-148572... 29 4.2
09_06_0172 + 21329904-21331512,21331595-21331740,21332333-213325... 29 5.5
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 7.3
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848... 28 7.3
05_04_0002 + 17031662-17032264 28 9.6
03_06_0437 - 33912326-33912520,33912870-33912998,33913147-339133... 28 9.6
03_03_0142 + 14800317-14801240 28 9.6
01_05_0027 - 17331888-17331968,17332236-17332806,17333190-173333... 28 9.6
>06_01_0450 +
3185342-3185645,3185761-3185837,3185948-3186028,
3186508-3186636,3186765-3186851,3186962-3187015,
3187432-3187522,3187615-3187685,3187770-3187839,
3187988-3188040,3188132-3188225,3188569-3188666,
3190126-3190209
Length = 430
Score = 31.5 bits (68), Expect = 0.78
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +1
Query: 154 SAPPXGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQS 321
+AP GGH + +P R ++ + T+T S G G +P G + A G S
Sbjct: 19 AAPATGGHVTVTARKPRGRRLSGKST--TTTTTASLGCGSKPNNIRGATAAAGGGS 72
>02_05_1147 -
34447519-34448042,34448126-34449092,34449458-34449657,
34449867-34450051,34450130-34450228,34450316-34450357,
34450516-34450860,34450956-34451101,34451213-34451296,
34451424-34451502,34451596-34451675,34451824-34451875,
34451992-34452026
Length = 945
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 202 EPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATN 312
+ P+ G A P A STF H Q P ATN +++ N
Sbjct: 586 QAPQAG--APYPQAASTFPHSQASHPAATNPSTIPQN 620
>01_07_0082 - 40965947-40967023
Length = 358
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 130 SSSIKQGCSAPPXGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNG 294
S++ G + PP G+ + ++P PP+ G PP + + G G P+A G
Sbjct: 247 STAAPYGTAPPPQYGYG--YPAQPPPPQAGYGYPPPPPQAGYGGGYGYPPQAGYG 299
>01_05_0564 +
23312419-23312987,23314652-23314751,23314832-23315055,
23315212-23316041,23316161-23316275,23316786-23316905,
23317410-23317450,23317546-23317595,23317684-23317719,
23317836-23317856
Length = 701
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 202 EPPRTGRRAVPPS--ATSTFSHGQGDEPKATNGTSVATNGQST 324
+ PR+G ++ S A ST +HGQ + G + +N QST
Sbjct: 410 QSPRSGGTSLNSSGFAASTVNHGQSSVVRTQGGNGIPSNNQST 452
>04_03_1049 +
22015053-22015083,22015770-22015885,22016013-22016108,
22016229-22016285,22016468-22016620,22016754-22016838,
22017097-22017187,22017324-22017488,22017813-22017932,
22018020-22018104,22018234-22018402,22019055-22019173,
22019250-22019440,22019746-22019957,22020905-22021500,
22022538-22022658,22023439-22023868,22024412-22024797,
22024976-22025071,22025380-22025432,22026915-22027061,
22027139-22027309,22027880-22027962,22028049-22028247,
22028668-22028789,22029752-22029818,22029960-22030010,
22030768-22031001,22031263-22031451,22032455-22032646,
22032742-22032936
Length = 1673
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +3
Query: 189 RFRTGATEDRAPCRSTKRN---EHFQPRTRR*AESDQRHFSSDQRSVHS*GEPGATDPAG 359
R RTG E R T+R E +P R A + +R +++QR + + G +DPAG
Sbjct: 573 RRRTGGVERRRREPVTRRRGGKERRRPSWRALAANRRRGEAANQRRGEAATQRGGSDPAG 632
Query: 360 G 362
G
Sbjct: 633 G 633
>04_03_0358 -
14856490-14856573,14856829-14856874,14857116-14857229,
14857366-14857401,14857822-14857946,14858052-14858117,
14858295-14858534,14858900-14859001,14859101-14859138,
14859219-14859321,14859402-14859524,14860666-14860742,
14860853-14860998,14861077-14861246
Length = 489
Score = 29.1 bits (62), Expect = 4.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 197 SESKMLVWPPXGGAEXPCLIDEL 129
+ +M +WP GG PC DEL
Sbjct: 315 TRGRMTMWPELGGRSLPCTSDEL 337
>09_06_0172 +
21329904-21331512,21331595-21331740,21332333-21332556,
21333689-21334448
Length = 912
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +1
Query: 199 PEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNG 315
P PP A PP S + +G G P G +VA G
Sbjct: 167 PPPPYGSGYAPPPPYGSGYGYGYGPAPDYGGGMAVANGG 205
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = +1
Query: 160 PPXGGHTNIFDSEPEPPRTGRRAV-PPSATSTFSHGQGDEPKATNGTSVATNGQSTP 327
PP G N F + P PP R + P+ +T S G P + TNG P
Sbjct: 653 PPAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPPPLPPANRTNGPGVP 709
>02_04_0179 +
20682852-20684510,20684593-20684661,20684741-20684809,
20686779-20688206
Length = 1074
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 10/80 (12%)
Frame = +1
Query: 118 PQ*RSSSIKQGCSAPPXGGHTNIFDSEPEPPR------TGRRAVPPSATSTFSHGQGDE- 276
PQ + +++ +G PP G EPP+ PP +GDE
Sbjct: 44 PQPQQATVAEGDPPPPATGSAEEVAGNGEPPQPPATDPASEPTAPPEPQRATEEKKGDEP 103
Query: 277 -PKATNGT--SVATNGQSTP 327
P A+ G VA +GQ P
Sbjct: 104 PPPASTGVKEEVAGHGQPLP 123
>05_04_0002 + 17031662-17032264
Length = 200
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +1
Query: 214 TGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTP 327
+G+R P S+TST + G GD+ + +S +++ ++P
Sbjct: 54 SGKRGPPTSSTSTMASG-GDDDEEEGASSSSSSADTSP 90
>03_06_0437 -
33912326-33912520,33912870-33912998,33913147-33913317,
33913877-33913993,33914150-33914800
Length = 420
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +1
Query: 142 KQGCSAPPXGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATN 312
++G +APP G T + PP T +V A S G+G P A+ AT+
Sbjct: 153 RRGEAAPP--GATGADPPDNPPPATAAASVQGGADSPARGGRGSPPPASEPPGGATS 207
>03_03_0142 + 14800317-14801240
Length = 307
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 199 PEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSV 303
P P R G A P+A +T G E +T GTS+
Sbjct: 198 PPPARKGLSACNPAAATTTPGGAAAESASTAGTSL 232
>01_05_0027 -
17331888-17331968,17332236-17332806,17333190-17333335,
17333412-17333459
Length = 281
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +1
Query: 151 CSAPPXGGHTNIFDSEPEPPRTGRRAV--PPSATSTFSHGQGDEPKATNGTSVATNGQST 324
CS G + P + +R V PPS++ +F H +P+ G V + Q
Sbjct: 10 CSKKWPEGAVTFISNPPLLGTSSKRRVDDPPSSSCSFKHVASKQPRTPGGQPVGPSRQRM 69
Query: 325 P 327
P
Sbjct: 70 P 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,101,539
Number of Sequences: 37544
Number of extensions: 356455
Number of successful extensions: 1100
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -