Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_F06
         (1056 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597...    32   0.88 
07_03_1065 + 23711677-23711837,23711859-23712180,23713071-23713277     29   8.2  

>03_02_0155 -
           5974118-5974173,5974242-5974314,5974393-5974500,
           5975189-5976914,5977065-5977620,5978008-5978485
          Length = 998

 Score = 31.9 bits (69), Expect = 0.88
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +3

Query: 861 PXPPLLXMPPXXXPXFXXXNXLPPLSPP 944
           P P  L  PP   P F   N LPP SPP
Sbjct: 64  PMPGSLPPPPPRPPSFAPENALPPSSPP 91


>07_03_1065 + 23711677-23711837,23711859-23712180,23713071-23713277
          Length = 229

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3

Query: 958 LRXAVGGESGGRXFXXXXXGXYXGGMXSNGGXG 860
           +R +VGG  GGR       G   GG   NGG G
Sbjct: 59  VRHSVGGGDGGRGRVVVVPGEGSGGNGGNGGSG 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,514,635
Number of Sequences: 37544
Number of extensions: 81635
Number of successful extensions: 292
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3129488528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)